infoseq European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/information.infoseq http://www.ebi.ac.uk/soaplab/emboss4/services/information.infoseq?wsdl Displays some simple information about sequences. For example, the sequences' USA, name, accession number, type (nucleic or protein), length, percentage C+G, and/or description. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/infoseq.html infoseq Displays some simple information about sequences. For example, the sequences' USA, name, accession number, type (nucleic or protein), length, percentage C+G, and/or description. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/infoseq.html sequence_usa Type: string. Any valid sequence with gaps. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example, database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name -->swissprot:AMIC_PSEAE |database:ID_name -->embl:paamir. Choose either this parameter or the sequence_direct_data parameter but not both together. Parameter mandatory if the sequence_direct_data parameter has not been chosen. false String sequence_direct_data Type: string. Nucleotide or protein sequence with gaps. Choose this parameter if you want to provide the 'sequence' value as string. Parameter mandatory if the sequence_usa parameter hasn't been chosen. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. By default the service autodetects the sequence format. false String sbegin Type: long. The first position to be used in the sequence, for example, sbegin=1 (default value) means start with the first base in the sequence. This is an optional parameter. false String send Type: long. The last position to be used in the sequence. This is an optional parameter. By default it is the end the sequence. false String sprotein Type: boolean. Is the sequence a protein? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. false String snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. By default the service can autodetect if a sequence is a nucleotide or protein sequence. false String sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. False by default. false String slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. False by default. false String supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. False by default. false String columns Type: boolean(Yes/No). Set this option to (Yes) to print the sequence information into neat, aligned columns in the output file. Alternatively, set it to (No), in which case the information records will be delimited by a character, which you may specify by using the 'delimiter' parameter option. In other words, if 'columns' parameter is set on, the 'delimiter' parameter option is overriden. This is an optional parameter. The default value is 'Yes'. Yes false String delimiter Type: string. This string, which is usually a single character only, is used to delimit individual records in the text output file. It could be a space character, a tab character, a pipe character or any other character or string. This is an optional parameter. The default value is '|'. | false String html Type: boolean (No/Yes). Display the output as an html table. This is an optional parameter. The default value is 'No'. false false String only Type: boolean (No/Yes). This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: '-nohead -noname -noacc -notype -nopgc -nodesc' to get only the length output, you can specify '-only -length'. This is an optional parameter. Default value is 'No'. false false String heading Type: boolean (Yes/No). Display column headings. This is an optional parameter. The default value is 'Yes'. true false String usa Type: boolean (Yes/No). Display the USA of the sequence. This is an optional parameter. The default value is 'No'. false String name Type: boolean (Yes/No). The name of the sequence should be a single word that you will use to identify the sequence. It should have no (or few)punctuation characters in it. This is an optional parameter. The default value is 'No'. false false String accession Type: boolean (Yes/No). Display 'accession' column. This is an optional parameter. The default value is 'Yes'. false false String gi Type: boolean (Yes/No). Display 'GI' column. This is an optional parameter. The default value is 'No'. false false String version Type: boolean (Yes/No). Display 'version' column. This is an optional parameter. The default value is 'No'. false false String type Type: boolean (Yes/No). Display 'type'(nucleotide or protein sequence) column. This is an optional parameter. The default value is 'Yes'. Yes false String length Type: boolean (Yes/No). Display 'length' column. This is an optional parameter. Default value is 'Yes'. Yes false String pgc Type: boolean (Yes/No). Display 'percent GC content' column. This is an optional parameter. The default value is 'Yes'. Yes false String description Type: boolean (Yes/No). Enter any description of the sequence that you require. This is an optional parameter. The default value is 'Yes'. Yes false String report Type: string. A general report for the underlying analysis job. false String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. false String outfile Returns information about a specified sequence. false String http://www.mygrid.org.uk/ontology#retrieving http://www.mygrid.org.uk/ontology#EMBL_nucleotide_sequence_database Soaplab service