<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>ehmmfetch</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/hmm.ehmmfetch</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/hmm.ehmmfetch?wsdl</interfaceWSDL>
		<serviceDescriptionText>Retrieve an HMM from an HMM database. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.1/embassy/hmmernew/ehmmfetch.html</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>ehmmfetch</operationName>
				<operationDescriptionText>Retrieve an HMM from an HMM database. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.1/embassy/hmmernew/ehmmfetch.html</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>database_direct_data</parameterName>
						<parameterDescription>Type: string. HMMER hmm database file. &apos;database_direct_data&apos; parameter and&apos;database_url&apos;parameters are mutually exclusive. This is a mandatory parameter if the&apos;database_url&apos;parameter is not selected.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>database_url</parameterName>
						<parameterDescription>Type: string. URL of HMMER hmm database file. &apos;database_direct_data&apos; parameter and &apos;database_url&apos; parameters are mutually exclusive. This is a mandatory parameter if the&apos;database_direct_data&apos;parameter is not selected.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>name</parameterName>
						<parameterDescription>Type: string. Entry name. Any string is accepted. This is a mandatory parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>nhmm</parameterName>
						<parameterDescription>Type: boolean. Interpret name as an HMM number instead of a name. Numbering starts at 0. For example, to fetch the frst HMM from an HMM database called foo, you would do (at the command line)&apos;hmmfetch -n 0 foo&apos;. This is an optional parameter. The default value is&apos;false&apos;.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outfile</parameterName>
						<parameterDescription>Returns hidden markov model (HMM).</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#retrieving</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
