ehmmemit European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/hmm.ehmmemit http://www.ebi.ac.uk/soaplab/emboss4/services/hmm.ehmmemit?wsdl Generate sequences from a profile HMM. Detailed info about this operation can be found at the following links: http://emboss.bioinformatics.nl/cgi-bin/emboss/help/ehmmemit and http://www.csb.yale.edu/userguides/seq/hmmer/docs/ ehmmemit Generate sequences from a profile HMM. Detailed info about this operation can be found at the following links: http://emboss.bioinformatics.nl/cgi-bin/emboss/help/ehmmemit and http://www.csb.yale.edu/userguides/seq/hmmer/docs/ hmmfile_direct_data Type: string. File containing one or more HMMs (hidden markov model). 'hmmfile_direct_data' parameter and 'hmmfile_url' parameter are mutually exclusive. This is a mandatory parameter if 'hmmfile_url'is not selected. false String hmmfile_url Type: string. URL of file containing one or more HMMs (hidden markov model).'hmmfile_direct_data'parameter and'hmmfile_url'parameter are mutually exclusive. This is a mandatory parameter if'hmmfile_direct_data'is not selected. false String c Type: boolean. Predict a single majority-rule consensus sequence instead of sampling sequences from the HMM's probability distribution. Highly conserved residues (p>= 0.9 for DNA, p>= 0.5 for protein) are shown in upper case; others are shown in lower case. Some insert states may become part of the majority rule consensus, because they are used in>= 50% of generated sequences; when this happens, insert-generated residues are simply shown as'x'. This is an optional parameter. The default value is'false'. false false String seed Type: long. Set the random seed. The default is to use time() to generate a different seed for each run, which means that two different runs of hmmemit on the same HMM will give slightly different results. You can use this option to generate reproducible results. This is an optional parameter. 0 false String a Type: boolean. Write the generated sequences in an aligned format (SELEX) rather than FASTA. This is an optional parameter. The default value is'false'. false false String nseq Type: long. Generate <n> sequences. Default value is 10. This is an optional parameter. 10 false String q Type: boolean. Quiet; suppress all output except for the sequences themselves. Useful for directing the output. This is an optional parameter. The default value is false. false false String report Type: string. A general report for the underlying analysis job. false String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. false String o Returns sequences in specified format. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#fasta_format String Soaplab service