ehmmcalibrate European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/hmm.ehmmcalibrate http://www.ebi.ac.uk/soaplab/emboss4/services/hmm.ehmmcalibrate?wsdl Calibrate HMM search statistics. Detailed info about this operation can be found at the following links: http://emboss.bioinformatics.nl/cgi-bin/emboss/help/ehmmcalibrate and http://www.csb.yale.edu/userguides/seq/hmmer/docs/ ehmmcalibrate Calibrate HMM search statistics. Detailed info about this operation can be found at the following link: http://emboss.bioinformatics.nl/cgi-bin/emboss/help/ehmmcalibrate and http://www.csb.yale.edu/userguides/seq/hmmer/docs/ hmmfilein_direct_data Type: string. HMM (hidden markov model) profile.'hmmfilein_direct_data'parameter and'hmmfilein_url'parameter are mutually exclusive. This is a mandatory parameter if'hmmfilein_url'is not selected. false String hmmfilein_url Type: string. URL of the file containing an HMM. (hidden markov model).'hmmfilein_direct_data'parameter and 'hmmfilein_url' parameter are mutually exclusive. This is a mandatory parameter if 'hmmfilein_direct_data' is not selected. false String cpu Type: long. Sets the maximum number of CPUs that the program will run on. The default is to use all CPUs in the machine. Overrides the HMMER NCPU environment variable. Only affects threaded versions of HMMER (the default on most systems). This is an optional parameter. 0 false String fixed Type: long. Fix the length of the random sequences to <n>, where <n> is a positive (and reasonably sized) integer. The default is instead to generate sequences with a variety of different lengths, controlled by a Gaussian (normal) distribution. This is an optional parameter. The default value is 0. 0 false String mean Type: float. Set the mean length of the synthetic sequences to<x>, where <x> is a positive real number. The default value is 350. This is an optional parameter. 350.0 false String num Type: long. Set the number of synthetic sequences to<n>, where<n>is a positive integer. If<n>is less than about 1000, the ft to the EVD (extreme value distribution) may fail. Higher numbers of<n>will give better determined EVD parameters. The default value is 5000; it was empirically chosen as a trade off between accuracy and computation time. This is an optional parameter. 5000 false String pvm Type: boolean. Run on a Parallel Virtual Machine (PVM). The PVM must already be running. The client program hmmcalibrate-pvm must be installed on all the PVM nodes. Optional PVM support must have been compiled into HMMER. This is an optional parameter. The default value is'false'. false false String sd Type: float. Set the standard deviation of the synthetic sequence length distribution to <x>, where <x> is a positive real number. The default value is 350. Note that the Gaussian is left-truncated so that no sequences have lengths<= 0. This is an optional parameter. 350.0 false String seed Type: long. Set the random seed to <n>, where<n>is a positive integer. The default is to use time() to generate a different seed for each run, which means that two different runs of hmmcalibrate on the same HMM will give slightly different results. You can use this option to generate reproducible results for different hmmcalibrate runs on the same HMM. This is an optional parameter. The defaut value is 0. 0 false String report Type: string. A general report for the underlying analysis job. false String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. false String hmmfileout Returns HMM profile with EVD parameters. false String histfile Save a histogram of the scores and the fitted theoretical curve to file. false String Soaplab service