seqret European Bioinformatics Institute EBI http://www.ebi.ac.uk/soaplab/services/edit.seqret http://www.ebi.ac.uk/soaplab/services/edit.seqret?wsdl seqret can read a sequence or many sequences from databases, or the output of other programs and then write them to the screen or pass them to other programs.It can read in the reverse complement of a nucleic acid sequence and change the case of the sequence being read in to upper or to lower case.It can also read in a sequence whose begin and end positions you have specified and write out that fragment. seqret <s:soaplabwsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha">http://www.ebi.ac.uk/soaplab/services/edit.seqret</s:soaplabwsdl> seqret can read a sequence or many sequences from databases, or the output of other programs and then write them to the screen or pass them to other programs. It can read in the reverse complement of a nucleic acid sequence and change the case of the sequence being read in to upper or to lower case.It can also read in a sequence whose begin and end positions you have specified and write out that fragment. sequence_usa The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS.The most common ways of specifying asequence is to type'database:entry', where'database'can be embl, uniprot or swissprot and'entry'is either the sequence's entry or ID name, or its Accession number in that database.For example: database:accession ->embl:X65923, swissprot:Q7M4G0, database:entry_name ->swissprot:AMIC_PSEAE, database:ID_name ->embl:paamir. Choose either this parameter or the "sequence_direct_data" parameter but not both together. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sequence_direct_data Nucleotide or protein sequence in specified format.Accepted format: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. false http://www.mygrid.org.uk/ontology#biological_sequence String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sformat Specified the format of your input sequence.Possible format: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig,raw,staden. if no format is explicitly specified EMBOSS tries each format in turn until one succeeds. false http://www.mygrid.org.uk/ontology#sequence_file_formats String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sbegin Integer. The first position to be used in the sequence.For example: sbegin=1 means start with the first base in the sequence 1 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter send Integer. The last position to be used in the sequence end of the sequence String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sprotein Boolean. Is the Sequence a protein? if not specified EMBOSS will figure it out false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter snucleotide Boolean. Is the Sequence a nucleotide? if not specified EMBOSS will figure it out false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sreverse Boolean. Use the reverse complement of a nucleic acid sequence false false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter slower Boolean. Convert the sequence to lower case false false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter supper Boolean. Convert the sequence to UPPER case false false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter feature Boolean. Use feature information false false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter firstonly Boolean. Read one sequence and stop. false false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter osformat Specify your ouput sequence format. Possible values: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. fasta false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter report Return a summary of the process. This report contains date and time a process started and ended, operating system platform used and many more information. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter outseq Return nucleotide or protein sequence in specified format. false http://www.mygrid.org.uk/ontology#biological_sequence String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#retrieving Soaplab service