pasteseq European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/edit.pasteseq http://www.ebi.ac.uk/soaplab/emboss4/services/edit.pasteseq?wsdl Insert one sequence into another. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/pasteseq.html pasteseq Insert one sequence into another. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/pasteseq.html asequence_usa Type: string. Any valid sequence with gaps. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example, database:accession =>embl:X65923 or swissprot:Q7M4G0 | database:entry_name =>swissprot:AMIC_PSEAE | database:ID_name =>embl:paamir. Choose either this parameter or the asequence_direct_data parameter but not both together. Parameter mandatory if the asequence_direct_data parameter hasn't been chosen. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter asequence_direct_data Type: string. Any valid sequence. Choose this parameter if you want to provide the 'asequence' value as string. This is the main input sequence. Parameter mandatory if the asequence_usa parameter hasn't been chosen. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sformat1 Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sbegin1 Type: long. The first position to be used in the sequence, for example: sbegin=1 means start with the first base in the sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter send1 Type: long. The last position to be used in the sequence. This is an optional parameter. false String sprotein1 Type: boolean. Is the sequence a protein? This is an optional parameter. false String snucleotide1 Type: boolean. Is the sequence a nucleotide? This is an optional parameter. false String sreverse1 Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. false String slower1 Type: boolean. Convert the sequence to lower case. This is an optional parameter. false String supper1 Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. false String bsequence_usa Type: string. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example, database:accession =>embl:X65923 or swissprot:Q7M4G0 | database:entry_name =>swissprot:AMIC_PSEAE | database:ID_name =>embl:paamir. Choose either this parameter or the bsequence_direct_data parameter but not both together. Parameter mandatory if the bsequence_direct_data parameter hasn't been chosen. false String bsequence_direct_data Type: string. Any valid sequence. Choose this parameter if you want to provide the 'bsequence' value as string. This is the sequence to be inserted. Parameter mandatory if the bsequence_usa parameter hasn't been chosen. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sformat2 Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. false String sbegin2 Type: long. The first position to be used in the sequence, for example: sbegin=1 means start with the first base in the sequence. This is an optional parameter. false String send2 Type: long. The last position to be used in the sequence. This is an optional parameter. false String sprotein2 Type: boolean. Is the sequence a protein? This is an optional parameter. false String snucleotide2 Type: boolean. Is the sequence a nucleotide? This is an optional parameter. false String sreverse2 Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. false String slower2 Type: boolean. Convert the sequence to lower case. This is an optional parameter. false String supper2 Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. false String pos Type: long. The position in the main input sequence to insert after. To insert before the start use the position 0. By default the second input sequence is added at the end of the main input sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter osformat Type: string. Format of the output sequence (outseq). This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. The default value is 'fasta'. fasta false String report Type: string. A general report for the underlying analysis job. false String detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. false String outseq Returns sequence. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String http://www.mygrid.org.uk/ontology#inserting http://www.mygrid.org.uk/ontology#EMBL_nucleotide_sequence_database Soaplab service