<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>nthseq</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/edit.nthseq</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/edit.nthseq?wsdl</interfaceWSDL>
		<serviceDescriptionText>Retrieves one sequence from a multiple set of sequences. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/nthseq.html</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>nthseq</operationName>
				<operationDescriptionText>Retrieves one sequence from a multiple set of sequences. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/nthseq.html</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>sequence_usa</parameterName>
						<parameterDescription>Type: string. Any valid sequence. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example,
database:accession =&gt;embl:X65923 or swissprot:Q7M4G0 | database:entry_name =&gt;swissprot:AMIC_PSEAE |
database:ID_name =&gt;embl:paamir.
Choose either this parameter or the sequence_direct_data parameter but not both together. Parameter mandatory if the sequence_direct_data parameter hasn&apos;t been chosen.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>sequence_direct_data</parameterName>
						<parameterDescription>Type: string. Any valid sequence. Choose this parameter if you want to provide the &apos;sequence&apos; value as string. Parameter mandatory if the sequence_usa parameter hasn&apos;t been chosen.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#biological_sequence</semanticType>
						<parameterFormat>http://www.mygrid.org.uk/ontology#single_sequence_format</parameterFormat>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>sformat</parameterName>
						<parameterDescription>Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>sbegin</parameterName>
						<parameterDescription>Type:long. The first position to be used in the sequence, for example: sbegin=1 means start with the first base in the sequence. This is an optional parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>send</parameterName>
						<parameterDescription>Type: long. The last position to be used in the sequence. This is an optional parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>sprotein</parameterName>
						<parameterDescription>Type: boolean. Is the sequence a protein? This is an optional parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>snucleotide</parameterName>
						<parameterDescription>Type: boolean. Is the sequence a nucleotide? This is an optional parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>sreverse</parameterName>
						<parameterDescription>Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>slower</parameterName>
						<parameterDescription>Type: boolean. Convert the sequence to lower case. This is an optional parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>supper</parameterName>
						<parameterDescription>Type: boolean. Convert the sequence to UPPER case. This is an optional parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>number</parameterName>
						<parameterDescription>Type: long. Position of the sequence to output. By default the first sequence in the list is number one. The second is number two and so on. The default value for this parameter is 1, that is, the program will retrieve the first sequence in the list. This is an optional parameter.</parameterDescription>
						<defaultValue>1</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>osformat</parameterName>
						<parameterDescription>Type: string. Format of the output sequence (outseq). This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. The default value is &apos;fasta&apos;. </parameterDescription>
						<defaultValue>fasta</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outseq</parameterName>
						<parameterDescription>Returns one sequence from a list of sequences.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#biological_sequence</semanticType>
						<parameterFormat>http://www.mygrid.org.uk/ontology#single_sequence_format</parameterFormat>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#retrieving</operationTask>
				<operationResource>http://www.mygrid.org.uk/ontology#EMBL_nucleotide_sequence_database</operationResource>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
