<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>newseq</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/edit.newseq</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/edit.newseq?wsdl</interfaceWSDL>
		<serviceDescriptionText>Type in a short new sequence. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/newseq.html</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>newseq</operationName>
				<operationDescriptionText>Type in a short new sequence. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/newseq.html</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>name</parameterName>
						<parameterDescription>Type: string. The name of the sequence should be a single word that you will use to identify the sequence. It should have no (or few) punctuation characters in it. This is a mandatory parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>description</parameterName>
						<parameterDescription>Type: string. Enter any description of the sequence that you require. This is a mandatory parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>type</parameterName>
						<parameterDescription>Type: string. Type of sequence. N for nucleotide, P for protein. The default value is N. This is an optional parameter.</parameterDescription>
						<defaultValue>N</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>sequence</parameterName>
						<parameterDescription>Type: string. The sequence itself. You will only be able to type in a short sequence of (typically) 250 characters, or so.  This is a mandatory parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#biological_sequence</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>osformat</parameterName>
						<parameterDescription>Type: string. Format of the output sequence (outseq). This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. The default value is &apos;fasta&apos;. </parameterDescription>
						<defaultValue>fasta</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outseq</parameterName>
						<parameterDescription>Returns sequence.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#biological_sequence</semanticType>
						<parameterFormat>http://www.mygrid.org.uk/ontology#single_sequence_format</parameterFormat>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

				<operationResource>http://www.mygrid.org.uk/ontology#EMBL_nucleotide_sequence_database</operationResource>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
