<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>makeprotseq</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/edit.makeprotseq</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/edit.makeprotseq?wsdl</interfaceWSDL>
		<serviceDescriptionText>Creates random protein sequences. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/makeprotseq.html</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>makeprotseq</operationName>
				<operationDescriptionText>Creates random protein sequences. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/makeprotseq.html</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>pepstatsfile_direct_data</parameterName>
						<parameterDescription>Type: string. This should be a pepstats output file. Protein sequences will be created with the composition in the pepstats output file. Choose either this parameter or the pepstatsfile_url but not both together. This is a mandatory parameter if pepstatsfile_url parameter has not been chosen.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>pepstatsfile_url</parameterName>
						<parameterDescription>Type: string. This should be a pepstats output file. Protein sequences will be created with the composition in the pepstats output file. Choose either this parameter or the pepstatsfile_direct_data but not both together. This is a mandatory parameter if pepstatsfile_direct_data parameter has not been chosen.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>amount</parameterName>
						<parameterDescription>Type: long. Number of sequences created. The default value is 100. This is a mandatory parameter.</parameterDescription>
						<defaultValue>100</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>length</parameterName>
						<parameterDescription>Type: long. Length of each sequence. The default value is 100. This is a mandatory parameter.</parameterDescription>
						<defaultValue>100</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>useinsert</parameterName>
						<parameterDescription>Type:boolean. Do you want to make an insert. The default value is &apos;NO&apos;. This is an optional parameter.</parameterDescription>
						<defaultValue>N</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>insert</parameterName>
						<parameterDescription>Type: string. String that is inserted into sequence. This is an optional parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>start</parameterName>
						<parameterDescription>Type: long. Start point of inserted sequence. The default value is 1. This is an optional parameter.</parameterDescription>
						<defaultValue>1</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>osformat</parameterName>
						<parameterDescription>Type: string. Format of the output sequence (outseq). This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. The default value is fasta. </parameterDescription>
						<defaultValue>fasta</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outseq</parameterName>
						<parameterDescription>Returns randomly created protein sequence.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#protein_sequence</semanticType>
						<parameterFormat>http://www.mygrid.org.uk/ontology#single_sequence_format</parameterFormat>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
