<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>showdb</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/display.showdb</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/display.showdb?wsdl</interfaceWSDL>
		<serviceDescriptionText>Displays information on the currently available databases. It writes out a simple table displaying the names, contents and available ways of accessing the sequence databases.
Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/showdb.html</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>display.showdb</operationName>
				<operationDescriptionText>Displays information on the currently available databases. It writes out a simple table displaying the names, contents and available ways of accessing the sequence databases.
Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/showdb.html</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>database</parameterName>
						<parameterDescription>Type: string. Name of a single database to give information on. For example, embl. This is an optional parameter. If this parameter is not selected the program will list information on all currently available databases.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>html</parameterName>
						<parameterDescription>Type: boolean. If you are sending the output to a file, this will format it for displaying as a table in a WWW document. The default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>protein</parameterName>
						<parameterDescription>Type: boolean. Display protein databases. True by default. This is an optional parameter.</parameterDescription>
						<defaultValue>true</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>nucleic</parameterName>
						<parameterDescription>Type: boolean. Display nucleic acid databases. True by default. This is an optional parameter.</parameterDescription>
						<defaultValue>true</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>full</parameterName>
						<parameterDescription>Type: boolean. Display all columns. False by default. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>methods</parameterName>
						<parameterDescription>Type: boolean. This displays the access methods that can be used on this database, for all, query or ID access. Default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>fields</parameterName>
						<parameterDescription>Type: boolean. This displays the search fields that can be used on this database, other than the standard &apos;id&apos; or &apos;acc&apos; fields. Default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>defined</parameterName>
						<parameterDescription>Type: boolean. This displays a short name for the file containing the database definition. Default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>release</parameterName>
						<parameterDescription>Type: boolean. Display &apos;release&apos; column. False by default.  This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>only</parameterName>
						<parameterDescription>Type: boolean. This is a way of shortening the command line if you only want a few standard columns to be displayed. Instead of specifying: &apos;-nohead -notype -noid -noquery -noall&apos; to get only the comment output, you can specify &apos;-only -comment&apos;. Default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>heading</parameterName>
						<parameterDescription>Type: boolean. Display column headings. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>type</parameterName>
						<parameterDescription>Type: boolean. Display &apos;type&apos; column. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>id</parameterName>
						<parameterDescription>Type: boolean. Display &apos;id&apos; column. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>query</parameterName>
						<parameterDescription>Type: boolean. Display &apos;qry&apos; column. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>all</parameterName>
						<parameterDescription>Type: boolean. Display &apos;all&apos; column. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>comment</parameterName>
						<parameterDescription>Type: boolean. Display &apos;comment&apos; column. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outfile</parameterName>
						<parameterDescription>Returns information on the currently available databases. </parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#retrieving</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
