<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>seealso</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/display.seealso</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/display.seealso?wsdl</interfaceWSDL>
		<serviceDescriptionText>Takes the name of an existing program in EMBOSS (or a program in one the associated EMBASSY packages) and gives a list of the programs which share some functionality with it. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/seealso.html</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>seealso</operationName>
				<operationDescriptionText>Takes the name of an existing program in EMBOSS (or a program in one the associated EMBASSY packages) and gives a list of the programs which share some functionality with it. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/seealso.html</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>search</parameterName>
						<parameterDescription>Type: string. Enter the name of an EMBOSS program. For example, seqret. This is a mandatory parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>explode</parameterName>
						<parameterDescription>Type: boolean. The groups that EMBOSS applications belong to have two forms,exploded and not exploded. The exploded group names are more numerous and often vaguely phrased than the non-exploded ones. The exploded names are formed from definitions of the group names that start like NAME1:NAME2 and which are then expanded into many combinations of the names as:&apos;NAME1&apos;,&apos;NAME2&apos;,&apos;NAME1 NAME2&apos;, NAME2 NAME1&apos;. The non-exploded names are simply like:&apos;NAME1 NAME2&apos;. Using exploded group names will find many more programs which share at least some of the expanded names than using the non-exploded names and so you will get more programs reported as sharing a similar function than you will if you specify that you wish to use non-exploded names. By default the program uses non-exploded group. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>emboss</parameterName>
						<parameterDescription>Type: boolean. If you use this option then EMBOSS program documentation will be searched. If this option is set to be false, then only the EMBASSY programs will be searched (if the embassy parameter is set to true). Default value is&quot;true&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>true</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>embassy</parameterName>
						<parameterDescription>Type: boolean. If you use this option then EMBASSY program documentation will be searched. If this option is set to be false, then only the EMBOSS programswill be searched (if the emboss parameter is set to true). EMBASSY programs are not strictly part of EMBOSS, but use the same code libraries and share the same look and feel, but are generally developed by people who wish the programs to be outside of the GNU Public Licence scheme. Default value is true. This is an optional parameter.</parameterDescription>
						<defaultValue>true</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>showembassy</parameterName>
						<parameterDescription>Type: string. If you use this option then this EMBASSY package program documentation will be searched. This is an optional parameter.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>html</parameterName>
						<parameterDescription>Type: string. If you are sending the output to a file, this will format it for displaying as a table in a WWW document. The default value is N. This is an optional parameter.</parameterDescription>
						<defaultValue>N</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>groups</parameterName>
						<parameterDescription>Type: boolean. If you use this option, then only the group names will be displayed to the file. False by default. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>colon</parameterName>
						<parameterDescription>Type: boolean. The groups that EMBOSS applications belong to have up to two levels, for example the primary group&apos;ALIGNMENT&apos;has several sub-groups, or second-level groups, e.g.: CONSENSUS, DIFFERENCES, DOT PLOTS, GLOBAL, LOCAL, MULTIPLE. To aid programs that parse the output of seealso,  a colon&apos;:&apos;will be placed between the first and second level of the group name if this option is set to true. False by default. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>outfile</parameterName>
						<parameterDescription>Returns a list of EMBOSS programs which share some functionality with a given EMBOSS programs.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#retrieving</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
