pepwheel European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/display.pepwheel http://www.ebi.ac.uk/soaplab/emboss4/services/display.pepwheel?wsdl Shows protein sequences as helices. It is useful for highlighting amphipathicity and other properties of residues around a helix. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/pepwheel.html pepwheel Shows protein sequences as helices. It is useful for highlighting amphipathicity and other properties of residues around a helix. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/pepwheel.html sequence_usa Type: string. Protein sequence. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example: database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name -->swissprot:AMIC_PSEAE | database:ID_name -->embl:paamir. Choose either this parameter or the sequence_direct_data parameter but not both together. Parameter mandatory if the sequence_direct_data parameter has not been chosen. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sequence_direct_data Type: string. Protein sequence. Choose this parameter if you want to provide the 'sequence' value as string. Parameter mandatory if the sequence_usa parameter hasn't been chosen. false http://www.mygrid.org.uk/ontology#protein_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sbegin Type: long. The first position to be used in the sequence, for example: sbegin=1 means start with the first base in the sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter send Type: long. The last position to be used in the sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sprotein Type: boolean. Is the sequence a protein? This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter graph_format Type: string. Format of the graphical output. This is an optional parameter. The allowed values for this parameter are: png, postscript, colourps, hpgl. Default value is png. png false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter wheel Type: boolean. Plot the wheel. The default value is "true". This is an optional parameter. true false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter steps Type: long. The number of residues plotted per turn is this value divided by the 'turns' value. The default value is 18. This is an optional parameter. 18 false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter turns Type: long. The number of residues plotted per turn is the 'steps' value divided by this value. The default value is 5. This is an optional parameter. 5 false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter amphipathic Type: string. If this is true then the residues ACFGILMVWY are marked as squares and all other residues are unmarked. This overrides any other markup that you may have specified using the parameters 'squares', 'diamonds' and 'octags'. The default value is "false". This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter squares Type: string. Specify the protein residues to mark with squares. By default ILVM are marked with squares. This is an optional parameter. ILVM false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter diamonds Type: string. Specify the protein residues to mark with diamonds. By default DENQST are marked with diamonds. This is an optional parameter. DENQST false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter octags Type: string. Specify the protein residues to mark with octagons. By default HKR are marked with octagons. This is an optional parameter. HKR false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter report Type: string. A general report for the underlying analysis job. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. false String Graphics_in_Postscript Returns peptide sequences displayed in a helical representation in postscript format. false String Graphics Returns peptide sequences displayed in a helical representation. false byte[] Graphics_in_PNG Returns peptide sequences displayed in a helical representation in png format. false byte[][] http://www.mygrid.org.uk/ontology#displaying Soaplab service