<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /C:/Documents and Settings/ytanoh/My Documents/taverna-1.4-old/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>lindna</serviceName>
		<organisation >
			<organisationName>European Bioinformatics Institute</organisationName>
		</organisation>

		<locationURL>http://www.ebi.ac.uk/soaplab/emboss4/services/display.lindna</locationURL>
		<interfaceWSDL>http://www.ebi.ac.uk/soaplab/emboss4/services/display.lindna?wsdl</interfaceWSDL>
		<serviceDescriptionText>Draws linear maps of DNA constructs. It uses the graphical shapes: ticks, ranges, and blocks to represent genetic markers (e.g, genes and ESTs) and places them according to their position in a DNA fragment. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/lindna.html</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>lindna</operationName>
				<operationDescriptionText>Draws linear maps of DNA constructs. It uses the graphical shapes: ticks, ranges, and blocks to represent genetic markers (e.g, genes and ESTs) and places them according to their position in a DNA fragment. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/lindna.html</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>infile_direct_data</parameterName>
						<parameterDescription>Type: string. input file. Choose either this parameter or the infile_url parameter but not both together. Parameter mandatory if the &quot;infile_url&quot; parameter has not been chosen. For an example of input:
http://emboss.sourceforge.net/apps/release/4.0/emboss/apps/lindna.html#input.1</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>infile_url</parameterName>
						<parameterDescription>Type: string. Commands to the lindna drawing program file. Choose either this parameter or the infile_direct_data parameter but not both together. Parameter mandatory if the infile_direct_data parameter has not been chosen. </parameterDescription>
						<defaultValue>inputfile</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>ruler</parameterName>
						<parameterDescription>Type: boolean. If this option is true then a ruler line marking every 5th and 10th character in the alignment is displayed. Default value is &quot;true&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>true</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>blocktype_Open</parameterName>
						<parameterDescription>Type: boolean. Display open blocks. The default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>blocktype_Filled</parameterName>
						<parameterDescription>Type: boolean. Display filled blocks. The default value is &quot;true&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>true</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>blocktype_Outline</parameterName>
						<parameterDescription>Type: boolean. Display blocks with black border. The default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>graph_format</parameterName>
						<parameterDescription>Type: string. Format of the graphical output. The allowed values for this parameter are: png, postscript, colourps, hpgl. The default value is &quot;png&quot;. This is an optional parameter. </parameterDescription>
						<defaultValue>png</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>maxgroups</parameterName>
						<parameterDescription>Type: long. Maximum number of groups. The default value is 20. This is an optional parameter.</parameterDescription>
						<defaultValue>20</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>maxlabels</parameterName>
						<parameterDescription>Type: long. Maximum number of labels. Default value is 10000. This is an optional parameter.</parameterDescription>
						<defaultValue>10000</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>intersymbol_Straight</parameterName>
						<parameterDescription>Type: boolean. The type of junctions between blocks is straight. The default value is &quot;true&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>true</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>intersymbol_Up</parameterName>
						<parameterDescription>Type: boolean. The type of junctions between blocks is small, discontinous lines and up (compare to the block). The default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>intersymbol_Down</parameterName>
						<parameterDescription>Type: boolean. The type of junctions between blocks is small discontinous lines and down (compare to the block). The default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>intersymbol_No</parameterName>
						<parameterDescription>Type: boolean. No Jonctions between blocks. The default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>intercolour</parameterName>
						<parameterDescription>Type: long. Colour of junctions between blocks (enter a colour number between 0 and 15). Default value is 1. This is an optional parameter.</parameterDescription>
						<defaultValue>1</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>interticks</parameterName>
						<parameterDescription>Type: boolean. Horizontal junctions between ticks. The default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>gapsize</parameterName>
						<parameterDescription>Type: long. Interval between ticks in the ruler. The default value is 500. This is an optional parameter.</parameterDescription>
						<defaultValue>500</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>ticklines</parameterName>
						<parameterDescription>Type: boolean. Vertical lines at the ruler&apos;s ticks. Default value is &quot;false&quot;. This is an optional parameter.</parameterDescription>
						<defaultValue>false</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>textheight</parameterName>
						<parameterDescription>Type: float. Height of text. Enter a number&lt;1.0 or &gt;1.0 to decrease or increase the size, respectively. The default value is 1.0. This is an optional parameter.</parameterDescription>
						<defaultValue>1.0</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>textlength</parameterName>
						<parameterDescription>Type: float. Length of text. Enter a number&lt;1.0 or&gt;1.0 to decrease or increase the size, respectively. The default value is 1.0. This is an optional parameter.</parameterDescription>
						<defaultValue>1.0</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>margin</parameterName>
						<parameterDescription>Type: float. Width of left margin. This is the region left to the groups where the names of the groups are displayed. Enter a number&lt;1.0  or&gt;1.0 to decrease or increase the size, respectively. The default value is 1.0. This is an optional parameter.</parameterDescription>
						<defaultValue>1.0</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>tickheight</parameterName>
						<parameterDescription>Type: float. Height of ticks. Enter a number&lt;1.0 or &gt;1.0 to decrease or increase the size, respectively. The default value is 1.0. This is an optional parameter.</parameterDescription>
						<defaultValue>1.0</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>blockheight</parameterName>
						<parameterDescription>Type: float. Height of blocks. Enter a number&lt;1.0 or&gt;1.0 to decrease or increase the size, respectively. The default value is 1.0. This is an optional parameter.</parameterDescription>
						<defaultValue>1.0</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>rangeheight</parameterName>
						<parameterDescription>Type: float. Height of range ends. Enter a number&lt;1.0 or&gt;1.0 to decrease or increase the size, respectively. The default value is 1.0. This is an optional parameter.</parameterDescription>
						<defaultValue>1.0</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>gapgroup</parameterName>
						<parameterDescription>Type: float. Space between groups. Enter a number&lt;1.0 or&gt;1.0 to decrease or increase the size, respectively. This is an optional parameter.</parameterDescription>
						<defaultValue>1.0</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>postext</parameterName>
						<parameterDescription>Type: float. Space between text and ticks, blocks, and ranges. Enter a number&lt;1.0 or &gt;1.0 to decrease or increase the size, respectively. The default value is 1.0. This is an optional parameter.</parameterDescription>
						<defaultValue>1.0</defaultValue>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>report</parameterName>
						<parameterDescription>Type: string. A general report for the underlying analysis job.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>detailed_status</parameterName>
						<parameterDescription>Type: long. The exit code of the underlying analysis job, 0 means the job returned normally.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>Graphics_in_Postscript</parameterName>
						<parameterDescription>Returns linear maps of DNA constructs in postscript format.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>String</transportDataType>
					</parameter>

					<parameter >
						<parameterName>Graphics</parameterName>
						<parameterDescription>Returns linear maps of DNA constructs.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>byte[]</transportDataType>
					</parameter>

					<parameter >
						<parameterName>Graphics_in_PNG</parameterName>
						<parameterDescription>Returns linear maps of DNA constructs in png format.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<transportDataType>byte[][]</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter</collectionSemanticType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#displaying</operationTask>
			</serviceOperation>

		</operations>

		<serviceType>Soaplab service</serviceType>
	</serviceDescription>

</serviceDescriptions>
