dotmatcher European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_dot_plots.dotmatcher http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_dot_plots.dotmatcher?wsdl Displays a thresholded dotplot of two sequences. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/cvs/emboss/apps/dotmatcher.html dotmatcher Displays a thresholded dotplot of two sequences. Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/cvs/emboss/apps/dotmatcher.html asequence_usa Parameter type: String. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example: database:accession =>embl:X65923 or swissprot:Q7M4G0 | database:entry_name =>swissprot:AMIC_PSEAE |database:ID_name =>embl:paamir. Choose either this parameter or the asequence_direct_data parameter but not both together. Parameter mandatory if the asequence_direct_data parameter hasn't been chosen. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter asequence_direct_data Parameter type: String. Any valid sequence. Choose this parameter if you want to provide the'asequence'value as string. Parameter mandatory if the asequence_usa parameter hasn't been chosen. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sformat1 Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sbegin1 Parameter type: long. The first position to be used in the sequence, for example: sbegin=1 means start with the first base in the sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter send1 Parameter type: long. The last position to be used in the sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sprotein1 Parameter type: boolean. Is the sequence a protein? This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter snucleotide1 Parameter type: boolean. Is the sequence a nucleotide? This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sreverse1 Parameter type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter slower1 Parameter type: boolean. Convert the sequence to lower case. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter supper1 Parameter type: boolean. Convert the sequence to UPPER case. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter bsequence_usa Parameter type: String. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example: database:accession =>embl:X65923 or swissprot:Q7M4G0 | database:entry_name =>swissprot:AMIC_PSEAE |database:ID_name =>embl:paamir. Choose either this parameter or the asequence_direct_data parameter but not both together. Parameter mandatory if the asequence_direct_data parameter hasn't been chosen. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter bsequence_direct_data Parameter type: String. Any valid sequence. Choose this parameter if you want to provide the'bsequence'value as string. Parameter mandatory if the bsequence_usa parameter hasn't been chosen. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#single_sequence_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sformat2 Specifies the format of the input sequence. This is an optional parameter. The allowed values for this parameter are: gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sbegin2 Parameter type: long. The first position to be used in the sequence, for example: sbegin=1 means start with the first base in the sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter send2 Parameter type: long. The last position to be used in the sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sprotein2 Parameter type: boolean. Is the sequence a protein? This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter snucleotide2 Parameter type: boolean. Is the sequence a nucleotide? This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sreverse2 Parameter type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter slower2 Parameter type: boolean. Convert the sequence to lower case. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter supper2 Parameter type: boolean. Convert the sequence to UPPER case. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter graph_format Parameter type: string. Format of the graphical output. This is an optional parameter. The allowed values for this parameter are: png, postscript, colourps, hpgl. png false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter matrixfile_direct_data This is the scoring matrix file used when comparing sequences. By default it is the file'EBLOSUM62'(for proteins) or the file'EDNAFULL'(for nucleic sequences). These files are found in the'data'directory of the EMBOSS installation. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter matrixfile_url This is the scoring matrix file used when comparing sequences. By default it is the file'EBLOSUM62'(for proteins) or the file'EDNAFULL'(for nucleic sequences). This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter windowsize Parameter type: long. Window size over which to test threshhold. For example 10. This is an optional parameter. 10 false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter threshold Parameter type: long. Threshold. This is an optional parameter. 23 false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter stretch Parameter type: boolean. Display a non-proportional graph. This is an optional parameter. No false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter report Parameter type: string. A general report for the underlying analysis job. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter detailed_status Parameter type: long. The exit code of the underlying analysis job, 0 means the job returned normally. false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter Graphics_in_Postscript Return a dotplot false http://www.mygrid.org.uk/ontology#sequence_alignment_dot_plot String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter Graphics Return a dotplot false http://www.mygrid.org.uk/ontology#sequence_alignment_dot_plot Graphics_in_PNG Return a dotplot in png. false http://www.mygrid.org.uk/ontology#sequence_alignment_dot_plot http://www.mygrid.org.uk/ontology#displaying http://www.mygrid.org.uk/ontology#EMBL_nucleotide_sequence_database Soaplab service