cons European Bioinformatics Institute http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_consensus.cons http://www.ebi.ac.uk/soaplab/emboss4/services/alignment_consensus.cons?wsdl Creates a consensus sequence from multiple alignments.Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/cvs/cons.html cons Creates a consensus sequence from multiple alignments.Detailed info about this operation can be found at the following link: http://emboss.sourceforge.net/apps/cvs/cons.html sequence_usa Type: string. File containing a sequence alignment. Any valid sequence with gaps. The Uniform Sequence Address, or USA, is a standard way of specifying a sequence to be read into a program in EMBOSS. The most common ways of specifying a sequence is to type (database:entry), where database can be embl, uniprot or swissprot and entry is either the sequence`s entry or ID name, or its Accession number in that database. For example:database:accession -->embl:X65923 or swissprot:Q7M4G0 | database:entry_name -->swissprot:AMIC_PSEAE |database:ID_name -->embl:paamir.Choose either this parameter or the sequence_direct_data parameter but not both together. Parameter mandatory if the sequence_direct_data parameter has not been chosen. false http://www.mygrid.org.uk/ontology#multiple_sequence_alignment_report String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sequence_direct_data File containing a sequence alignment. Any valid sequence with gaps. Choose this parameter if you want to provide the'sequence'value as string. Parameter mandatory if the sequence_usa parameter has not been chosen. false http://www.mygrid.org.uk/ontology#multiple_sequence_alignment_report String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sformat Type: string. Specifies the format of the input sequence. This is an optional parameter. Allowed values for this parameter are:gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. false http://www.mygrid.org.uk/ontology#single_sequence_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter sbegin Type: long. The first position to be used in the sequence, for example: sbegin=1 means start with the first base in the sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter send Type: long. The last position to be used in the sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sprotein Type: boolean. Is the sequence a protein? This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter snucleotide Type: boolean. Is the sequence a nucleotide? This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter sreverse Type: boolean. Use reverse complement of the nucleic acid sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter slower Type: boolean. Convert the sequence to lower case. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter supper Type: boolean. Convert the sequence to UPPER case. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter datafile_direct_data Type: string. This is the scoring matrix file used when comparing sequences. By default it is the file'EBLOSUM62'(for proteins) or the file'EDNAFULL'(for nucleic sequences). These files are found in the 'data' directory of the EMBOSS installation. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter datafile_url Type: string. This is the scoring matrix file used when comparing sequences. By default it is the file'EBLOSUM62'(for proteins) or the file'EDNAFULL'(for nucleic sequences). These files are found in the 'data' directory of the EMBOSS installation. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter plurality Type: float. Set a cut-off for the number of positive matches below which there is no consensus. The default plurality is taken as half the total weight of all the sequences in the alignment. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter identity Type: long. Provides the facility of setting the required number of identities at a site for it to give a consensus at that position. Therefore, if this is set to the number of sequences in the alignment only columns of identities contribute to the consensus. This is an optional parameter. 0 false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter setcase Type: float. Sets the threshold for the positive matches above which the consensus is upper-case and below which the consensus is in lower-case. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter name Type: string. Name of the consensus sequence. EMBOSS known type: Sequence identifier for an output sequence. This is an optional parameter. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter osformat Type: string. Format of the output sequence (outseq). This is an optional parameter. Allowed values for this parameter are:gcg, gcg8, embl, swiss, fasta, ncbi, genbank, nbrf, pir, codata, strider, clustal, phylip, acedb, msf, jackknifer, jackknifernon, nexus, nexusnon, treecon, mega, meganon, ig, staden, text, raw. fasta false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter report Type: string. A general report for the underlying analysis job. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter detailed_status Type: long. The exit code of the underlying analysis job, 0 means the job returned normally. false String http://www.mygrid.org.uk/mygrid-moby-service#secondaryParameter outseq Returns consensus sequence. false http://www.mygrid.org.uk/ontology#biological_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#merging Soaplab service