<?xml version = "1.0" encoding = "UTF-8"?>
<serviceDescriptions  xmlns="pd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="pd /home/franck/taverna-1.4/plugins/pedro/services/model/common.xsd">
	<serviceDescription >
		<serviceName>get_motifs_by_gene</serviceName><organisation> <organisationName>GenomeNet</organisationName> <organisationDescriptionText>http://www.genome.jp/</organisationDescriptionText> </organisation>
		<author>KEGG</author>
		<locationURL>http://soap.genome.jp/keggapi/request_v5.0.cgi</locationURL>
		<interfaceWSDL>http://soap.genome.jp/KEGG.wsdl</interfaceWSDL>
		<serviceDescriptionText>Search motifs in a specified database for a specified gene.</serviceDescriptionText>
		<operations >
			<serviceOperation >
				<operationName>get_motifs_by_gene</operationName>
				<operationSpec>&lt;s:arbitrarywsdl xmlns:s=&quot;http://org.embl.ebi.escience/xscufl/0.1alpha&quot;&gt;&lt;s:wsdl&gt;http://soap.genome.jp/KEGG.wsdl&lt;/s:wsdl&gt;&lt;s:operation&gt;get_motifs_by_gene&lt;/s:operation&gt;&lt;/s:arbitrarywsdl&gt;</operationSpec>
				<operationDescriptionText>Search motifs in a specified database for a specified gene.</operationDescriptionText>
				<operationInputs >
					<parameter >
						<parameterName>db</parameterName>
						<messageName>get_motifs_by_geneRequest</messageName>
						<parameterDescription>User can specify one of the four database; Pfam, TIGRFAM, PROSITE pattern, PROSITE profile as &apos;pfam&apos; ,&apos;tfam&apos;, &apos;pspt&apos;, &apos;pspf&apos;, respectively. Or &apos;all&apos;to specify all of the four databases above.</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#KEGG_record</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

					<parameter >
						<parameterName>genes_id</parameterName>
						<messageName>get_motifs_by_geneRequest</messageName>
						<parameterDescription>KEGG database entry_id.Example: eco:b0002</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#KEGG_genes_id</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationInputs>

				<operationOutputs >
					<parameter >
						<parameterName>return</parameterName>
						<messageName>get_motifs_by_geneResponse</messageName>
						<parameterDescription>Returns motifs id and definitions of specified gene id</parameterDescription>
						<isConfigurationParameter>false</isConfigurationParameter>
						<semanticType>http://www.mygrid.org.uk/ontology#KEGG_record</semanticType>
						<transportDataType>String</transportDataType>
						<collectionSemanticType>http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter</collectionSemanticType>
					</parameter>

				</operationOutputs>

				<operationTask>http://www.mygrid.org.uk/ontology#searching</operationTask>
				<operationResource>http://www.mygrid.org.uk/ontology#KEGG</operationResource>
				<operationMethod>http://www.mygrid.org.uk/ontology#pattern_and_profile_search_algorithms</operationMethod>
			</serviceOperation>

		</operations>

		<serviceType>WSDL service</serviceType>
	</serviceDescription>

</serviceDescriptions>
