off endgaps 1 ktup sequences topdiag 5 pairgap 3 matrix gapdist 4 gapopen window 5 gapext 0.5 transitions_weight alignment runClustalwFast runClustalwFast www.pcm.uam.es inb@pcm.uam.es http://bioinfo.pcm.uam.es/cgi-bin/moby/dispatcher.cgi BioMOBY service Makes a ClustalW multiple sequence alignment (fast method).