getPrediction Virginia Bioinformatics Institute (VBI) http://pathport.bioinformatics.vt.edu:6565/axis/services/tico http://www.vbi.vt.edu/~pathport/services/wsdls/tico.wsdl Postprocess predictions of prokaryotic genes with the objective to improve the accuracy of annotated Translation Initiation Sites (TIS). getPrediction <s:arbitrarywsdl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:wsdl>http://www.vbi.vt.edu/~pathport/services/wsdls/tico.wsdl</s:wsdl><s:operation>getPrediction</s:operation></s:arbitrarywsdl> Postprocess predictions of prokaryotic genes with the objective to improve the accuracy of annotated Translation Initiation Sites (TIS). in0:sequence_id getPredictionRequest User sequence_id input false http://www.mygrid.org.uk/ontology#nucleotide_sequence_id String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in1:sequence_file getPredictionRequest User sequence file in fasta format false http://www.mygrid.org.uk/ontology#DNA_sequence http://www.mygrid.org.uk/ontology#fasta_format String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in2:gene_file getPredictionRequest Putative genes in simple-coord format false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:output_format getPredictionRequest Output format. One of the following format: GFF | Glimmer-like | Simple Coord | GFF false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in4:searchUp getPredictionRequest Maximum distance to a given start position for upstream alternative starts between 50--250. 250 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in5: getPredictionRequest Maximum distance to a given start position for downstream alternative starts between 50--500 250 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in6:extractUp getPredictionRequest Number of nucleotides to be be extracted upstream (5') a given start position between 10--100 30 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in7:extractDown getPredictionRequest Number of nucleotides to be extracted downstream (3') a given start position between 10--100. 30 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in8:sigma getPredictionRequest Smoothing parameter between 0.1 --2.0 0.5 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in9:autoSigma getPredictionRequest Automated sigma optimization. Enter 'YES' or 'NO' YES false String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter in3:minGeneLength getPredictionRequest The minimum length of a gene after reannotation of the TIS (denoted in bp) 60 false http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter getPredictionReturn getPredictionResponse Returns the postprocessing predictions of prokaryotic genes. false http://www.mygrid.org.uk/ontology#gene_prediction_report String http://www.mygrid.org.uk/mygrid-moby-service#simpleParameter http://www.mygrid.org.uk/ontology#filtering http://www.mygrid.org.uk/ontology#gene_prediction_algorithm WSDL service