2.1 Core WorkflowModel Usage

The usage in red needs to be changed.

The usage in blue is dubious and needs to be checked.

The usage in brown needs to have the used concepts moved to a reasonable place and possibly re-implemented

net.sf.taverna.t2.annotation.Annotated

    used by
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualViewFactory

    parameter to
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualView.AnnotatedContextualView(Annotated<?>)

net.sf.taverna.t2.annotation.AnnotationAssertion

    used by
        net.sf.taverna.t2.workbench.ui.actions.activity.HTMLBasedActivityContextualView<ConfigBean>

    getDetail()
        net.sf.taverna.t2.workbench.ui.actions.activity.HTMLBasedActivityContextualView<ConfigBean>

net.sf.taverna.t2.annotation.AnnotationChain

    used by
        net.sf.taverna.t2.workbench.ui.actions.activity.HTMLBasedActivityContextualView<ConfigBean>

    getAssertions()
        net.sf.taverna.t2.workbench.ui.actions.activity.HTMLBasedActivityContextualView<ConfigBean>

net.sf.taverna.t2.annotation.annotationbeans.Author

    used by
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel

net.sf.taverna.t2.annotation.annotationbeans.DescriptiveTitle

    used by
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction.RunWorkflowAction()

net.sf.taverna.t2.annotation.annotationbeans.ExampleValue

    used by
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction.RunWorkflowAction()

net.sf.taverna.t2.annotation.annotationbeans.FreeTextDescription

    used by
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction.RunWorkflowAction()

net.sf.taverna.t2.annotation.annotationbeans.HostInstitution

    used by
        net.sf.taverna.t2.workbench.ui.actions.activity.HTMLBasedActivityContextualView<ConfigBean>
        net.sf.taverna.t2.activities.localworker.views.LocalworkerActivityConfigView

    constructed by
        net.sf.taverna.t2.activities.localworker.views.LocalworkerActivityConfigView

    setText(String)
        net.sf.taverna.t2.activities.localworker.views.LocalworkerActivityConfigView

net.sf.taverna.t2.facade.ResultListener

    used by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor

    implemented by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor.MonitorResultListener
        net.sf.taverna.t2.workbench.views.results.ResultTreeModel
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

    constructed by
        net.sf.taverna.t2.workbench.run.DataflowRun

net.sf.taverna.t2.facade.WorkflowInstanceFacade

    used by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.run.DataflowRun

    addResultListener(ResultListener)
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        net.sf.taverna.t2.workbench.run.DataflowRun

    removeResultListener(ResultListener) used by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor
        net.sf.taverna.t2.workbench.run.DataflowRun

    returned by
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel.getFacade()

    parameter to
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent.register(WorkflowInstanceFacade, boolean)
        net.sf.taverna.t2.workbench.run.DataflowRun.DataflowRun(WorkflowInstanceFacade, Map<String, T2Reference>, Date, ReferenceService)
        net.sf.taverna.t2.workbench.run.DataflowRunsComponent.runDataflow(WorkflowInstanceFacade, Map<String, T2Reference>)

    fire() used by
        net.sf.taverna.t2.workbench.run.DataflowRun

    getContext() used by
        net.sf.taverna.t2.workbench.run.DataflowRun

    getDataflow() used by
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        net.sf.taverna.t2.workbench.run.DataflowRun

    getWorkflowRunId() used by
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        net.sf.taverna.t2.workbench.run.DataflowRun

    getPushedDataMap() used by
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

    pushData(WorkflowDataToken, String) used by
        net.sf.taverna.t2.workbench.run.DataflowRun

net.sf.taverna.t2.invocation.InvocationContext

    used by
        net.sf.taverna.t2.workbench.views.monitor.LineageResultsTableModel
        net.sf.taverna.t2.workbench.views.monitor.PortTab
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel
        net.sf.taverna.t2.reference.ui.referenceactions.SaveInputsAsXML
        net.sf.taverna.t2.workbench.views.results.saveactions.SaveAllResultsSPI
        net.sf.taverna.t2.workbench.views.results.saveactions.SaveIndividualResult
        net.sf.taverna.t2.workbench.views.results.RenderedResultComponent
        net.sf.taverna.t2.workbench.views.results.ResultTreeNode
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

    parameter to
        net.sf.taverna.t2.workbench.views.monitor.LineageResultsTableModel.LineageResultsTableModel(Map<String, T2Reference>, InvocationContext)
        net.sf.taverna.t2.workbench.views.monitor.LineageResultsTableModel.setContext(InvocationContext)
        net.sf.taverna.t2.workbench.views.monitor.PortTab.PortTab(String, Map<String, T2Reference>, RenderedResultComponent, InvocationContext)
        net.sf.taverna.t2.workbench.views.monitor.PortTab.setContext(InvocationContext)
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel.ProvenanceResultsPanel(List<LineageQueryResultRecord>, InvocationContext)
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel.setContext(InvocationContext)
        net.sf.taverna.t2.reference.ui.referenceactions.SaveInputsAsXML.setInvocationContext(InvocationContext)
        net.sf.taverna.t2.renderers.RendererRegistry.getRenderersForMimeType(InvocationContext, T2Reference, String)
        net.sf.taverna.t2.workbench.views.results.saveactions.SaveAllResultsSPI.setInvocationContext(InvocationContext)
        net.sf.taverna.t2.workbench.views.results.saveactions.SaveIndividualResult.setInvocationContext(InvocationContext)
        net.sf.taverna.t2.workbench.views.results.saveactions.SaveIndividualResultSPI.setInvocationContext(InvocationContext)
        net.sf.taverna.t2.workbench.views.results.ResultsUtils.buildErrorDocumentString(ErrorDocument, InvocationContext)
        net.sf.taverna.t2.workbench.views.results.ResultsUtils.buildErrorDocumentTree(DefaultMutableTreeNode, ErrorDocument, InvocationContext)
        net.sf.taverna.t2.workbench.views.results.ResultsUtils.getErrorDocuments(T2Reference, InvocationContext)
        net.sf.taverna.t2.workbench.views.results.ResultsUtils.getMimeTypes(ExternalReferenceSPI, InvocationContext)
        net.sf.taverna.t2.workbench.views.results.ResultTreeModel.insertNewDataTokenNode(T2Reference, int[], String, InvocationContext)
        net.sf.taverna.t2.workbench.views.results.ResultTreeModel.updateNodeWithData(ResultTreeNode, T2Reference, InvocationContext)
        net.sf.taverna.t2.workbench.views.results.ResultTreeNode.ResultTreeNode(T2Reference, InvocationContext)
        net.sf.taverna.t2.workbench.views.results.ResultTreeNode.setContext(InvocationContext)

    returned by
        net.sf.taverna.t2.workbench.views.monitor.LineageResultsTableModel.getContext()
        net.sf.taverna.t2.workbench.views.monitor.PortTab.getContext()
        net.sf.taverna.t2.workbench.views.results.ResultTreeNode.getContext()

    getReferenceService()
        net.sf.taverna.t2.workbench.views.results.saveactions.SaveAllResultsSPI
        net.sf.taverna.t2.workbench.views.results.saveactions.SaveIndividualResult
        net.sf.taverna.t2.workbench.views.results.RenderedResultComponent
        net.sf.taverna.t2.workbench.views.results.ResultsUtils
        net.sf.taverna.t2.workbench.views.results.ResultTreeNode

net.sf.taverna.t2.invocation.WorkflowDataToken

    parameter to
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor.MonitorResultListener.resultTokenProduced(WorkflowDataToken, String)
        net.sf.taverna.t2.workbench.views.results.ResultTreeModel.resultTokenProduced(WorkflowDataToken, String)
        net.sf.taverna.t2.workbench.views.results.ResultTreeModel.resultTokenProducedGui(WorkflowDataToken, String)
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent.resultTokenProduced(WorkflowDataToken, String)
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent.pushInputData(WorkflowDataToken, String)

    constructed in
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        net.sf.taverna.t2.workbench.run.DataflowRun

    getContext()
        net.sf.taverna.t2.workbench.views.results.ResultTreeModel
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        
    getData()
        net.sf.taverna.t2.workbench.views.results.ResultTreeModel
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        
    getIndex()
        net.sf.taverna.t2.workbench.views.results.ResultTreeModel
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        net.sf.taverna.t2.workbench.run.DataflowRun

    getOwningProcess()
        net.sf.taverna.t2.workbench.views.results.ResultTreeModel

net.sf.taverna.t2.invocation.impl.InvocationContextImpl

    constructed by
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.views.monitor.ShowLineageResultsTable
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

net.sf.taverna.t2.invocation.TokenOrderException

    caught by
        net.sf.taverna.t2.workbench.run.DataflowRun

net.sf.taverna.t2.monitor.MonitorManager

    getInstance()
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor
        net.sf.taverna.t2.workbench.run.DataflowRun

    addObserver(Observer<MonitorMessage>)
        net.sf.taverna.t2.workbench.run.DataflowRun

    removeObserver(Observer<MonitorMessage>)
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor
        net.sf.taverna.t2.workbench.run.DataflowRun

net.sf.taverna.t2.monitor.MonitorNode

    implemented by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitorNode

net.sf.taverna.t2.monitor.MonitorableProperty

    parameter to
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor.addPropertiesToNode(String[], Set<MonitorableProperty<?>>)
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor.registerNode(Object, String[], Set<MonitorableProperty<?>>)

net.sf.taverna.t2.monitor.MonitorManager.AddPropertiesMessage

    used by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor

    getOwningProcess()
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor

    getNewProperties()
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor

net.sf.taverna.t2.monitor.MonitorManager.DeregisterNodeMessage

    used by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor

    getOwningProcess()
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor

net.sf.taverna.t2.monitor.MonitorManager.MonitorMessage

    parameter to
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor.notify(Observable<MonitorMessage>, MonitorMessage)

net.sf.taverna.t2.monitor.MonitorManager.RegisterNodeMessage

    used by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor

    getWorkflowObject()
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor

    getOwningProcess()
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor

    getProperties()
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor

net.sf.taverna.t2.monitor.MonitorableProperty

    used by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitorNode

    parameter to
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitorNode.GraphMonitorNode(Processor, String[], Set<MonitorableProperty<?>>, GraphController)
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitorNode.addMonitorableProperty(MonitorableProperty<?>)

    returned by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitorNode.getProperties()

    getName()
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitorNode

    getValue()
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitorNode

net.sf.taverna.t2.monitor.NoSuchPropertyException

    caught by
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitorNode

net.sf.taverna.t2.provenance.api.ProvenanceAccess

    constructed in
        net.sf.taverna.t2.workbench.views.monitor.MonitorViewComponent
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        net.sf.taverna.t2.workbench.run.DataflowRunsComponent
        net.sf.taverna.t2.workbench.run.ReferenceDatabaseCleanUpShutdownHook

    fetchPortData(String, String, String, String, String)
        net.sf.taverna.t2.workbench.views.monitor.MonitorViewComponent
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

    isTopLevelDataflow(String)
        net.sf.taverna.t2.workbench.run.DataflowRunsComponent

    listRuns(String, Map<String, String>)
        net.sf.taverna.t2.workbench.run.DataflowRunsComponent

    removeRun(String)
        net.sf.taverna.t2.workbench.run.ReferenceDatabaseCleanUpShutdownHook

net.sf.taverna.t2.provenance.connector.ProvenanceConnector

    used in
        net.sf.taverna.t2.workbench.views.monitor.MonitorViewComponent
        net.sf.taverna.t2.workbench.views.monitor.MonitorGraphEventManager
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel

    parameter to
        net.sf.taverna.t2.workbench.views.monitor.MonitorViewComponent.setProvenanceConnector(ProvenanceConnector)
        net.sf.taverna.t2.workbench.views.monitor.MonitorGraphEventManager.MonitorGraphEventManager(MonitorViewComponent, ProvenanceConnector, Dataflow, String)

    getInvocationContext()
        net.sf.taverna.t2.workbench.views.monitor.MonitorGraphEventManager

    getSessionID()
        net.sf.taverna.t2.workbench.views.monitor.MonitorViewComponent

    init()
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.run.DataflowRun

    setInvocationContext(InvocationContext)
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction

    setReferenceService(ReferenceService)
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.run.DataflowRun

    setSessionID(String)
        net.sf.taverna.t2.workbench.run.DataflowRun

net.sf.taverna.t2.provenance.ProvenanceConnectorFactory

    getConnectorType()
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.run.DataflowRun

    getProvenanceConnector()
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.run.DataflowRun

net.sf.taverna.t2.provenance.ProvenanceConnectorFactoryRegistry
    
    getInstance()
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.run.DataflowRun

    getInstances()
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.run.DataflowRun

net.sf.taverna.t2.provenance.lineageservice.Dependencies

    used in
        net.sf.taverna.t2.workbench.views.monitor.MonitorGraphEventManager
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

    getRecords()
        net.sf.taverna.t2.workbench.views.monitor.MonitorGraphEventManager
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

net.sf.taverna.t2.provenance.lineageservice.LineageQueryResultRecord

    used in
        net.sf.taverna.t2.workbench.views.monitor.MonitorGraphEventManager
        net.sf.taverna.t2.workbench.views.monitor.PortTab
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

    parameter to
        net.sf.taverna.t2.workbench.views.monitor.PortTab.setLineageRecords(List<LineageQueryResultRecord>)
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel.ProvenanceResultsPanel(List<LineageQueryResultRecord>, InvocationContext)
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel.setLineageRecords(List<LineageQueryResultRecord>)

    returned by
        net.sf.taverna.t2.workbench.views.monitor.PortTab.getLineageRecords()
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel.getLineageRecords()

    getIteration()
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

    getValue()
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

    getVname()
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel

    isInput()
        net.sf.taverna.t2.workbench.views.monitor.ProvenanceResultsPanel

    toString()
        net.sf.taverna.t2.workbench.views.monitor.MonitorGraphEventManager

net.sf.taverna.t2.provenance.lineageservice.utils.WorkflowInstance

    used by
        net.sf.taverna.t2.workbench.run.DataflowRunsComponent

    getInstanceID()
        net.sf.taverna.t2.workbench.run.DataflowRunsComponent

================================================== Now only doing class usage ====================================

net.sf.taverna.t2.workflowmodel.CompoundEdit

    used by
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.workbench.design.actions.EditDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowOutputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveMergeAction
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.loop.LoopContextualView
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ActivityConfigurationDialog<A, B>
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualView
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

net.sf.taverna.t2.workflowmodel.Condition

    used by
        net.sf.taverna.t2.ui.menu.items.condition.ConditionSection
        net.sf.taverna.t2.ui.menu.items.condition.RemoveConditionMenuAction
        net.sf.taverna.t2.workbench.design.actions.RemoveConditionAction
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction
        net.sf.taverna.t2.workbench.models.graph.DefaultGraphEventManager
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.condition.ConditionContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.condition.ConditionContextualViewFactory
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel
        net.sf.taverna.t2.workbench.views.graph.actions.DeleteGraphComponentAction

net.sf.taverna.t2.workflowmodel.Configurable

    used by
        net.sf.taverna.t2.servicedescriptions.ConfigurableServiceProvider<ConfigurationBean>

net.sf.taverna.t2.workflowmodel.ConfigurationException

    used by
        net.sf.taverna.t2.servicedescriptions.AbstractConfigurableServiceProvider<ConfigType>
        net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionDeserializer
        net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl
        net.sf.taverna.t2.workbench.ui.servicepanel.actions.AddServiceProviderAction

net.sf.taverna.t2.workflowmodel.Dataflow

    used by
        net.sf.taverna.t2.activities.beanshell.menu.AddBeanshellTemplateAction
        net.sf.taverna.t2.activities.biomoby.actions.AddParserActionHelper
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyObjectActionHelper
        net.sf.taverna.t2.activities.biomoby.datatypedescriptions.BiomobyDatatypeDescription
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyCollectionDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.activities.dataflow.actions.EditNestedDataflowAction
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowSource
        net.sf.taverna.t2.activities.dataflow.servicedescriptions.DataflowTemplateService
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityConfigView
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityContextualView
        net.sf.taverna.t2.activities.localworker.views.LocalworkerActivityConfigView
        net.sf.taverna.t2.activities.rshell.menu.AddRshellTemplateAction
        net.sf.taverna.t2.activities.spreadsheet.actions.SpreadsheetImportActivityConfigurationAction
        net.sf.taverna.t2.activities.spreadsheet.menu.SpreadsheetImportAddTemplateAction
        net.sf.taverna.t2.activities.stringconstant.actions.StringConstantActivityConfigurationAction
        net.sf.taverna.t2.activities.stringconstant.menu.AddStringConstantTemplateAction
        net.sf.taverna.t2.activities.wsdl.actions.AbstractAddXMLSplitterAction<ActivityType>
        net.sf.taverna.t2.activities.wsdl.actions.WSDLActivityConfigureAction
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.servicedescriptions.ServiceDescription<ConfigType>
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.ConnectInputPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.ConnectOutputPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.ConnectPortsAction
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.ui.menu.items.activityport.SetConstantInputPortValueMenuAction
        net.sf.taverna.t2.ui.menu.items.condition.RemoveConditionMenuAction
        net.sf.taverna.t2.ui.menu.items.contextualviews.InsertSection
        net.sf.taverna.t2.ui.menu.items.contextualviews.PasteMenuAction
        net.sf.taverna.t2.ui.menu.items.contextualviews.ShowConfigureMenuAction
        net.sf.taverna.t2.ui.menu.items.dataflow.CreateInputMenuAction
        net.sf.taverna.t2.ui.menu.items.dataflow.CreateOutputMenuAction
        net.sf.taverna.t2.ui.menu.items.dataflow.WorkflowServiceTemplatesSection
        net.sf.taverna.t2.ui.menu.items.link.RemoveLinkMenuAction
        net.sf.taverna.t2.ui.menu.items.merge.RemoveMergeMenuAction
        net.sf.taverna.t2.ui.menu.items.ports.ConnectDataflowInputPortMenuActions
        net.sf.taverna.t2.ui.menu.items.ports.ConnectDataflowOutputPortMenuActions
        net.sf.taverna.t2.ui.menu.items.ports.EditDataflowInputPortMenuAction
        net.sf.taverna.t2.ui.menu.items.ports.EditDataflowOutputPortMenuAction
        net.sf.taverna.t2.ui.menu.items.ports.RemoveDataflowInputPortMenuAction
        net.sf.taverna.t2.ui.menu.items.ports.RemoveDataflowOutputPortMenuAction
        net.sf.taverna.t2.ui.menu.items.processor.ConditionMenuActions
        net.sf.taverna.t2.ui.menu.items.processor.RemoveProcessorMenuAction
        net.sf.taverna.t2.ui.menu.items.processor.RenameProcessorMenuAction
        net.sf.taverna.t2.ui.perspectives.myexperiment.MainComponent
        net.sf.taverna.t2.ui.perspectives.myexperiment.UploadWorkflowDialog
        net.sf.taverna.t2.workbench.design.actions.AddConditionAction
        net.sf.taverna.t2.workbench.design.actions.AddDataflowInputAction
        net.sf.taverna.t2.workbench.design.actions.AddDataflowOutputAction
        net.sf.taverna.t2.workbench.design.actions.DataflowEditAction
        net.sf.taverna.t2.workbench.design.actions.EditDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.EditDataflowOutputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveConditionAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowOutputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDatalinkAction
        net.sf.taverna.t2.workbench.design.actions.RemoveMergeAction
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction
        net.sf.taverna.t2.workbench.design.actions.RenameProcessorAction
        net.sf.taverna.t2.workbench.edits.EditManager
        net.sf.taverna.t2.workbench.edits.impl.EditManagerImpl
        net.sf.taverna.t2.workbench.edits.impl.menu.AbstractUndoMenuAction
        net.sf.taverna.t2.workbench.edits.impl.menu.RedoMenuAction
        net.sf.taverna.t2.workbench.edits.impl.menu.UndoMenuAction
        net.sf.taverna.t2.workbench.file.AbstractDataflowPersistenceHandler
        net.sf.taverna.t2.workbench.file.DataflowInfo
        net.sf.taverna.t2.workbench.file.DataflowPersistenceHandler
        net.sf.taverna.t2.workbench.file.FileManager
        net.sf.taverna.t2.workbench.file.FileType
        net.sf.taverna.t2.workbench.file.events.AbstractDataflowEvent
        net.sf.taverna.t2.workbench.file.events.ClosedDataflowEvent
        net.sf.taverna.t2.workbench.file.events.ClosingDataflowEvent
        net.sf.taverna.t2.workbench.file.events.OpenedDataflowEvent
        net.sf.taverna.t2.workbench.file.events.SavedDataflowEvent
        net.sf.taverna.t2.workbench.file.events.SetCurrentDataflowEvent
        net.sf.taverna.t2.workbench.file.exceptions.UnsavedException
        net.sf.taverna.t2.workbench.file.impl.FileDataflowInfo
        net.sf.taverna.t2.workbench.file.impl.FileManagerImpl
        net.sf.taverna.t2.workbench.file.impl.T2DataflowOpener
        net.sf.taverna.t2.workbench.file.impl.T2DataflowSaver
        net.sf.taverna.t2.workbench.file.impl.actions.CloseAllWorkflowsAction
        net.sf.taverna.t2.workbench.file.impl.actions.CloseWorkflowAction
        net.sf.taverna.t2.workbench.file.impl.actions.OpenNestedWorkflowAction
        net.sf.taverna.t2.workbench.file.impl.actions.OpenWorkflowAction
        net.sf.taverna.t2.workbench.file.impl.actions.OpenWorkflowFromURLAction
        net.sf.taverna.t2.workbench.file.impl.actions.SaveAllWorkflowsAction
        net.sf.taverna.t2.workbench.file.impl.actions.SaveWorkflowAction
        net.sf.taverna.t2.workbench.file.impl.actions.SaveWorkflowAsAction
        net.sf.taverna.t2.workbench.file.impl.menu.FileOpenRecentMenuAction
        net.sf.taverna.t2.workbench.file.impl.menu.WorkflowsMenu
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.file.importworkflow.actions.ReplaceNestedWorkflowAction
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.file.importworkflow.menu.ImportWorkflowMenuAction
        net.sf.taverna.t2.workbench.loop.ShowContextualView
        net.sf.taverna.t2.workbench.models.graph.DefaultGraphEventManager
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.models.graph.svg.SVGGraphController
        net.sf.taverna.t2.workbench.run.DataflowRun
        net.sf.taverna.t2.workbench.run.DataflowRunsComponent
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.run.actions.ValidateWorkflowAction
        net.sf.taverna.t2.workbench.ui.actions.CopyGraphComponentAction
        net.sf.taverna.t2.workbench.ui.actions.CutGraphComponentAction
        net.sf.taverna.t2.workbench.ui.actions.CutProcessorAction
        net.sf.taverna.t2.workbench.ui.actions.activity.ActivityConfigurationAction<A, ConfigurationBean>
        net.sf.taverna.t2.workbench.ui.dndhandler.ServiceTransferHandler
        net.sf.taverna.t2.workbench.ui.impl.DataflowEditsListener
        net.sf.taverna.t2.workbench.ui.impl.DataflowSelectionManager
        net.sf.taverna.t2.workbench.ui.menu.CopyProcessorMenuAction
        net.sf.taverna.t2.workbench.ui.menu.CutProcessorMenuAction
        net.sf.taverna.t2.workbench.ui.servicepanel.ServiceTreeClickListener
        net.sf.taverna.t2.workbench.ui.views.contextualviews.ContextualViewComponent
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ActivityConfigurationDialog<A, B>
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualViewFactory
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationAction
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeContextualView
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.GraphViewComponent
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction
        net.sf.taverna.t2.workbench.views.graph.actions.SetDefaultInputPortValueAction
        net.sf.taverna.t2.workbench.views.graph.actions.AddWFInputAction
        net.sf.taverna.t2.workbench.views.graph.actions.AddWFOutputAction
        net.sf.taverna.t2.workbench.views.graph.actions.DeleteGraphComponentAction
        net.sf.taverna.t2.workbench.views.graph.actions.RenameWFInputOutputProcessorAction
        net.sf.taverna.t2.workbench.views.graph.actions.SaveGraphImageAction
        net.sf.taverna.t2.workbench.views.graph.menu.SaveGraphImageSubMenu
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor
        net.sf.taverna.t2.workbench.views.monitor.MonitorGraphEventManager
        net.sf.taverna.t2.workbench.views.monitor.MonitorViewComponent
        net.sf.taverna.t2.workbench.views.monitor.PreviousRunsComponent
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        
net.sf.taverna.t2.workflowmodel.DataflowInputPort

    used by
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.ui.menu.items.contextualviews.ShowConfigureMenuAction
        net.sf.taverna.t2.ui.menu.items.ports.ConnectDataflowInputPortMenuActions
        net.sf.taverna.t2.ui.menu.items.ports.EditDataflowInputPortMenuAction
        net.sf.taverna.t2.ui.menu.items.ports.RemoveDataflowInputPortMenuAction
        net.sf.taverna.t2.ui.menu.items.ports.WorkflowInputPortSection
        net.sf.taverna.t2.workbench.design.actions.AddDataflowInputAction
        net.sf.taverna.t2.workbench.design.actions.EditDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowInputPortAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.models.graph.DefaultGraphEventManager
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualViewFactory
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel
        net.sf.taverna.t2.workbench.views.graph.actions.DeleteGraphComponentAction
        net.sf.taverna.t2.workbench.views.graph.actions.RenameWFInputOutputProcessorAction
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        
net.sf.taverna.t2.workflowmodel.DataflowOutputPort

    used by
        net.sf.taverna.t2.reference.ui.InvalidDataflowReport
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.ui.menu.items.contextualviews.ShowConfigureMenuAction
        net.sf.taverna.t2.ui.menu.items.ports.ConnectDataflowOutputPortMenuActions
        net.sf.taverna.t2.ui.menu.items.ports.EditDataflowOutputPortMenuAction
        net.sf.taverna.t2.ui.menu.items.ports.RemoveDataflowOutputPortMenuAction
        net.sf.taverna.t2.ui.menu.items.ports.WorkflowOutputPortSection
        net.sf.taverna.t2.workbench.design.actions.AddDataflowOutputAction
        net.sf.taverna.t2.workbench.design.actions.EditDataflowOutputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowOutputPortAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.models.graph.DefaultGraphEventManager
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualViewFactory
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel
        net.sf.taverna.t2.workbench.views.graph.actions.DeleteGraphComponentAction
        net.sf.taverna.t2.workbench.views.graph.actions.RenameWFInputOutputProcessorAction
        net.sf.taverna.t2.workbench.views.results.RenderedResultComponent
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

net.sf.taverna.t2.workflowmodel.DataflowPort

    used by
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.workbench.models.graph.GraphController

net.sf.taverna.t2.workflowmodel.DataflowValidationReport

    used by
        net.sf.taverna.t2.reference.ui.InvalidDataflowReport
        net.sf.taverna.t2.workbench.run.actions.ValidateWorkflowAction

net.sf.taverna.t2.workflowmodel.Datalink

    used by
        net.sf.taverna.t2.reference.ui.InvalidDataflowReport
        net.sf.taverna.t2.ui.menu.items.link.LinkSection
        net.sf.taverna.t2.ui.menu.items.link.RemoveLinkMenuAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowOutputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDatalinkAction
        net.sf.taverna.t2.workbench.design.actions.RemoveMergeAction
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.models.graph.DefaultGraphEventManager
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.datalink.DatalinkContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.datalink.DatalinkContextualViewFactory
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorPredictedBehaviorContextualView
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction
        net.sf.taverna.t2.workbench.views.graph.actions.SetDefaultInputPortValueAction
        net.sf.taverna.t2.workbench.views.graph.actions.DeleteGraphComponentAction

net.sf.taverna.t2.workflowmodel.Edit

    used by
        net.sf.taverna.t2.activities.biomoby.actions.AddParserActionHelper
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyObjectActionHelper
        net.sf.taverna.t2.activities.biomoby.datatypedescriptions.BiomobyDatatypeDescription
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.servicedescriptions.ServiceDescription<ConfigType>
        net.sf.taverna.t2.ui.menu.items.activityport.ConnectPortsAction
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.workbench.design.actions.EditDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowOutputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveMergeAction
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction
        net.sf.taverna.t2.workbench.edits.EditManager
        net.sf.taverna.t2.workbench.edits.impl.EditManagerImpl
        net.sf.taverna.t2.workbench.edits.impl.menu.RedoMenuAction
        net.sf.taverna.t2.workbench.edits.impl.menu.UndoMenuAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.file.importworkflow.actions.ReplaceNestedWorkflowAction
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.iterationstrategy.contextview.IterationStrategyContextualView
        net.sf.taverna.t2.workbench.loop.AddLoopFactory
        net.sf.taverna.t2.workbench.loop.LoopContextualView
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.impl.DataflowEditsListener
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ActivityConfigurationDialog<A, B>
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationAction
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorDispatchStackContextualView
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

net.sf.taverna.t2.workflowmodel.EditException

    used by
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityConfigView
        net.sf.taverna.t2.activities.localworker.views.LocalworkerActivityConfigView
        net.sf.taverna.t2.activities.wsdl.actions.AbstractAddXMLSplitterAction<ActivityType>
        net.sf.taverna.t2.ui.menu.items.activityport.ConnectPortsAction
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.workbench.design.actions.AddConditionAction
        net.sf.taverna.t2.workbench.design.actions.AddDataflowInputAction
        net.sf.taverna.t2.workbench.design.actions.AddDataflowOutputAction
        net.sf.taverna.t2.workbench.design.actions.EditDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.EditDataflowOutputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveConditionAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowOutputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDatalinkAction
        net.sf.taverna.t2.workbench.design.actions.RemoveMergeAction
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction
        net.sf.taverna.t2.workbench.design.actions.RenameProcessorAction
        net.sf.taverna.t2.workbench.edits.EditManager
        net.sf.taverna.t2.workbench.edits.impl.EditManagerImpl
        net.sf.taverna.t2.workbench.edits.impl.menu.RedoMenuAction
        net.sf.taverna.t2.workbench.file.impl.T2DataflowOpener
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.iterationstrategy.contextview.IterationStrategyContextualView
        net.sf.taverna.t2.workbench.loop.AddLoopFactory
        net.sf.taverna.t2.workbench.loop.LoopContextualView
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.run.DataflowRun
        net.sf.taverna.t2.workbench.run.DataflowRunsComponent
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ActivityConfigurationDialog<A, B>
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationAction
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorDispatchStackContextualView
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

net.sf.taverna.t2.workflowmodel.Edits -- done for each method

    createDataflow()
        net.sf.taverna.t2.activities.dataflow.servicedescriptions.DataflowTemplateService
        net.sf.taverna.t2.workbench.file.impl.FileManagerImpl
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard

    createDataflowInputPort(String, int, int, Dataflow)
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.workbench.design.actions.AddDataflowInputAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger

    createDataflowOutputPort(String, Dataflow)
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.workbench.design.actions.AddDataflowOutputAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger

    createDatalink(EventForwardingOutputPort, EventHandlingInputPort)
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    createMerge(Dataflow)
        -- not used in UI

    createMergeInputPort(Merge, String, int)
        -- not used in UI

    createProcessor(String)
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityConfigView
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    createWorkflowInstanceFacade(Dataflow, InvocationContext, String)
        net.sf.taverna.t2.activities.dataflow.DataflowActivity
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction

    getAddActivityEdit(Processor, Activity<?>)
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityConfigView
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.loop.ShowContextualView
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    getAddActivityInputPortEdit(Activity<?>, ActivityInputPort)
        -- not used in UI

    getAddActivityInputPortMappingEdit(Activity<?>, String, String)
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.loop.LoopContextualView
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    getAddActivityOutputPortEdit(Activity<?>, OutputPort)
        -- not used in UI

    getAddActivityOutputPortMappingEdit(Activity<?>, String, String)
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.loop.LoopContextualView
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    getAddAnnotationAssertionEdit(AnnotationChain, AnnotationAssertion)
        -- not used in UI

    getAddAnnotationBean(AnnotationAssertion, AnnotationBeanSPI)
        -- not used in UI

    getAddAnnotationChainEdit(Annotated<?>, AnnotationBeanSPI)
        net.sf.taverna.t2.activities.localworker.views.LocalworkerActivityConfigView

    getAddAnnotationRole(AnnotationAssertion, AnnotationRole)
        -- never used

    getAddAnnotationSource(AnnotationAssertion, AnnotationSourceSPI)
        -- never used

    getAddCreator(AnnotationAssertion, Person)
        -- never used

    getAddCurationEvent(AnnotationAssertion, CurationEvent)
        -- never used

    getAddDataflowInputPortEdit(Dataflow, DataflowInputPort)
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.workbench.design.actions.AddDataflowInputAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger

    getAddDataflowOutputPortEdit(Dataflow, DataflowOutputPort)
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.workbench.design.actions.AddDataflowOutputAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger

    getChangeDataflowInputPortDepthEdit(DataflowInputPort, int)
        net.sf.taverna.t2.workbench.design.actions.EditDataflowInputPortAction

    getChangeDataflowInputPortGranularDepthEdit(DataflowInputPort, int)
        net.sf.taverna.t2.workbench.design.actions.EditDataflowInputPortAction

    getAddDispatchLayerEdit(DispatchStack, DispatchLayer<?>, int)
        net.sf.taverna.t2.workbench.loop.AddLoopFactory

    getAddMergeEdit(Dataflow, Merge)
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger

    getAddMergeInputPortEdit(Merge, MergeInputPort)
        -- not used in UI

    getReorderMergeInputPortsEdit(Merge, List<MergeInputPort>)
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationAction

    getAddProcessorEdit(Dataflow, Processor)
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.loop.ShowContextualView
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    getAddProcessorInputPortEdit(Processor, ProcessorInputPort)
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    getAddProcessorOutputPortEdit(Processor, ProcessorOutputPort)
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    getConfigureActivityEdit(Activity<ConfigurationBean>, ConfigurationBean)
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.workbench.file.importworkflow.actions.ReplaceNestedWorkflowAction
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.loop.ShowContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ActivityConfigurationDialog<A, B>
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    getConfigureEdit(Configurable<ConfigurationType>, ConfigurationType)
        net.sf.taverna.t2.workbench.loop.LoopContextualView

    getConnectDatalinkEdit(Datalink)
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    getConnectMergedDatalinkEdit(Merge, EventForwardingOutputPort, EventHandlingInputPort)
        -- not used in UI

    getConnectProcessorOutputEdit(Processor, String, EventHandlingInputPort)
        -- never used

    getCreateConditionEdit(Processor, Processor)
        net.sf.taverna.t2.workbench.design.actions.AddConditionAction

    getCreateDataflowInputPortEdit(Dataflow, String, int, int)
        -- not used in UI

    getCreateDataflowOutputPortEdit(Dataflow, String)
        -- not used in UI

    getDefaultDispatchStackEdit(Processor)
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.loop.ShowContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorDispatchStackContextualView
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    getDeleteDispatchLayerEdit(DispatchStack, DispatchLayer<?>)
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorDispatchStackContextualView.RemoveAction

    getDisconnectDatalinkEdit(Datalink)
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger

    getMapProcessorPortsForActivityEdit(Processor)
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityConfigView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ActivityConfigurationDialog<A, B>

    getRemoveActivityInputPortEdit(Activity<?>, ActivityInputPort)
        -- not used in UI

    getRemoveActivityInputPortMappingEdit(Activity<?>, String)
        net.sf.taverna.t2.workbench.loop.LoopContextualView.ConfigureAction.OKAction
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView

    getRemoveActivityOutputPortEdit(Activity<?>, OutputPort)
        -- not used in UI

    getRemoveActivityOutputPortMappingEdit(Activity<?>, String)
        net.sf.taverna.t2.workbench.loop.LoopContextualView.ConfigureAction.OKAction
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView

    getRemoveConditionEdit(Processor, Processor)
        net.sf.taverna.t2.workbench.design.actions.RemoveConditionAction
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction

    getRemoveDataflowInputPortEdit(Dataflow, DataflowInputPort)
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowInputPortAction

    getRemoveDataflowOutputPortEdit(Dataflow, DataflowOutputPort)
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowOutputPortAction

    getRemoveProcessorEdit(Dataflow, Processor)
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction

    getRemoveProcessorInputPortEdit(Processor, ProcessorInputPort)
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView

    getRemoveProcessorOutputPortEdit(Processor, ProcessorOutputPort)
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView

    getRemoveMergeEdit(Dataflow, Merge)
        net.sf.taverna.t2.workbench.design.actions.RemoveMergeAction

    getRenameDataflowInputPortEdit(DataflowInputPort, String)
        net.sf.taverna.t2.workbench.design.actions.EditDataflowInputPortAction

    getRenameDataflowOutputPortEdit(DataflowOutputPort, String)
        net.sf.taverna.t2.workbench.design.actions.EditDataflowOutputPortAction

    getRenameProcessorEdit(Processor, String)
        net.sf.taverna.t2.workbench.design.actions.RenameProcessorAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView

    getRenameMergeEdit(Merge, String)
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger

    getSetIterationStrategyStackEdit(Processor, IterationStrategyStack)
        net.sf.taverna.t2.workbench.iterationstrategy.contextview.IterationStrategyContextualView.ConfigureIterationStrategyAction.OKAction

    getUpdateDataflowInternalIdentifierEdit(Dataflow, String)
        net.sf.taverna.t2.workbench.ui.impl.DataflowEditsListener

    getUpdateDataflowNameEdit(Dataflow, String)
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualView

    createActivityInputPort(String, int, boolean, List<Class<? extends ExternalReferenceSPI>>, Class<?>)
        -- not used in UI

    createActivityOutputPort(String, int, int)
        -- not used in UI

    createProcessorInputPort(Processor, String, int)
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

    createProcessorOutputPort(Processor, String, int, int)
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

net.sf.taverna.t2.workflowmodel.EditsRegistry

    used by
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.activities.dataflow.servicedescriptions.DataflowTemplateService
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityConfigView
        net.sf.taverna.t2.activities.localworker.views.LocalworkerActivityConfigView
        net.sf.taverna.t2.workbench.design.actions.DataflowEditAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.loop.AddLoopFactory
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ActivityConfigurationDialog<A, B>
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationAction
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView

net.sf.taverna.t2.workflowmodel.EventForwardingOutputPort

    used by
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.workbench.design.actions.RemoveMergeAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeContextualView
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer

net.sf.taverna.t2.workflowmodel.EventHandlingInputPort

    used by
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeContextualView
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.views.graph.actions.SetDefaultInputPortValueAction

net.sf.taverna.t2.workflowmodel.impl.AbstractDataflowEdit

    used by
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit

net.sf.taverna.t2.workflowmodel.impl.AddDataflowInputPortEdit

    used by
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView.ChangeObserver

net.sf.taverna.t2.workflowmodel.impl.AddDataflowOutputPortEdit

    used by
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView.ChangeObserver

net.sf.taverna.t2.workflowmodel.impl.AddProcessorEdit

    used by
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView.ChangeObserver

net.sf.taverna.t2.workflowmodel.impl.DataflowImpl

    used by
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

net.sf.taverna.t2.workflowmodel.impl.DataflowInputPortImpl

    used by
        net.sf.taverna.t2.workbench.ui.views.contextualviews.dataflowinputport.DataflowInputPortContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.dataflowinputport.DataflowInputPortContextualViewFactory

net.sf.taverna.t2.workflowmodel.impl.DataflowOutputPortImpl

    used by
        net.sf.taverna.t2.workbench.ui.views.contextualviews.dataflowoutputport.DataflowOutputPortContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.dataflowoutputport.DataflowOutputPortContextualViewFactory

net.sf.taverna.t2.workflowmodel.impl.EditsImpl

    used by
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.edits.impl.EditManagerImpl
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction

net.sf.taverna.t2.workflowmodel.InputPort

    used by
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.ConnectPortsAction
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.ui.menu.items.ports.WorkflowInputPortSection
        net.sf.taverna.t2.workbench.loop.ActivityGenerator
        net.sf.taverna.t2.workbench.loop.LoopContextualView
        net.sf.taverna.t2.workbench.models.graph.GraphController

net.sf.taverna.t2.workflowmodel.InvalidDataflowException

    used by
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction

net.sf.taverna.t2.workflowmodel.Merge

    used by
        net.sf.taverna.t2.ui.menu.items.contextualviews.ShowConfigureMenuAction
        net.sf.taverna.t2.ui.menu.items.merge.MergeSection
        net.sf.taverna.t2.ui.menu.items.merge.RemoveMergeMenuAction
        net.sf.taverna.t2.workbench.design.actions.RemoveMergeAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.models.graph.DefaultGraphEventManager
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationAction
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeContextualViewFactory
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel
        net.sf.taverna.t2.workbench.views.graph.actions.DeleteGraphComponentAction

net.sf.taverna.t2.workflowmodel.MergeInputPort

    used by
        net.sf.taverna.t2.workbench.design.actions.RemoveMergeAction
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationAction
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeContextualView

net.sf.taverna.t2.workflowmodel.MergePort

    used by
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        
net.sf.taverna.t2.workflowmodel.OutputPort

    used by
        net.sf.taverna.t2.activities.beanshell.views.BeanshellConfigView
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyObjectActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.rshell.views.RshellActivityConfigView
        net.sf.taverna.t2.activities.wsdl.views.AbstractXMLSplitterActionView<BeanType>
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.ConnectPortsAction
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.ui.menu.items.ports.WorkflowOutputPortSection
        net.sf.taverna.t2.workbench.loop.ActivityGenerator
        net.sf.taverna.t2.workbench.loop.LoopConfigurationPanel
        net.sf.taverna.t2.workbench.loop.LoopContextualView
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel

net.sf.taverna.t2.workflowmodel.Port

    used by
        net.sf.taverna.t2.activities.beanshell.views.BeanshellConfigView
        net.sf.taverna.t2.activities.rshell.views.RshellActivityConfigView
        net.sf.taverna.t2.activities.spreadsheet.views.SpreadsheetImportContextualView
        net.sf.taverna.t2.activities.wsdl.views.AbstractXMLSplitterActionView<BeanType>
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer

net.sf.taverna.t2.workflowmodel.Processor

    used by
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.datatypedescriptions.BiomobyDatatypeDescription
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowSource
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityConfigView
        net.sf.taverna.t2.servicedescriptions.ServiceDescription<ConfigType>
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.contextualviews.ShowConfigureMenuAction
        net.sf.taverna.t2.ui.menu.items.processor.ConditionMenuActions
        net.sf.taverna.t2.ui.menu.items.processor.ProcessorSection
        net.sf.taverna.t2.ui.menu.items.processor.RemoveProcessorMenuAction
        net.sf.taverna.t2.ui.menu.items.processor.RenameProcessorMenuAction
        net.sf.taverna.t2.workbench.design.actions.AddConditionAction
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction
        net.sf.taverna.t2.workbench.design.actions.RenameProcessorAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.iterationstrategy.contextview.IterationStrategyContextualView
        net.sf.taverna.t2.workbench.iterationstrategy.contextview.IterationStrategyContextualViewFactory
        net.sf.taverna.t2.workbench.loop.AddLoopFactory
        net.sf.taverna.t2.workbench.loop.LoopConfigurationPanel
        net.sf.taverna.t2.workbench.loop.LoopContextualView
        net.sf.taverna.t2.workbench.models.graph.DefaultGraphEventManager
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.actions.CopyGraphComponentAction
        net.sf.taverna.t2.workbench.ui.actions.CopyProcessorAction
        net.sf.taverna.t2.workbench.ui.actions.CutGraphComponentAction
        net.sf.taverna.t2.workbench.ui.actions.CutProcessorAction
        net.sf.taverna.t2.workbench.ui.actions.activity.ActivityConfigurationAction<A, ConfigurationBean>
        net.sf.taverna.t2.workbench.ui.menu.CopyProcessorMenuAction
        net.sf.taverna.t2.workbench.ui.menu.CutProcessorMenuAction
        net.sf.taverna.t2.workbench.ui.views.contextualviews.AddLayerFactorySPI
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ActivityConfigurationDialog<A, B>
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorActivitiesContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorActivitiesContextualViewFactory
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorDispatchStackContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorDispatchStackContextualViewFactory
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorPredictedBehaviorContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorPredictedBehaviorContextualViewFactory
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction
        net.sf.taverna.t2.workbench.views.graph.actions.SetDefaultInputPortValueAction
        net.sf.taverna.t2.workbench.views.graph.actions.DeleteGraphComponentAction
        net.sf.taverna.t2.workbench.views.graph.actions.RenameWFInputOutputProcessorAction
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitor
        net.sf.taverna.t2.workbench.views.monitor.GraphMonitorNode
        net.sf.taverna.t2.workbench.views.monitor.MonitorGraphEventManager

net.sf.taverna.t2.workflowmodel.ProcessorFinishedEvent

    used by
        net.sf.taverna.t2.facade.impl.WorkflowInstanceFacadeImpl.ProcessorFinishedObserver

net.sf.taverna.t2.workflowmodel.ProcessorInputPort

    used by
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorPredictedBehaviorContextualView
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

net.sf.taverna.t2.workflowmodel.ProcessorOutputPort

    used by
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorPredictedBehaviorContextualView
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction

net.sf.taverna.t2.workflowmodel.ProcessorPort

    used by
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer

net.sf.taverna.t2.workflowmodel.processor.activity.Activity

    used by
        net.sf.taverna.t2.workbench.activityicons.ActivityIconManager
        net.sf.taverna.t2.servicedescriptions.AbstractTemplateService<ConfigType>
        net.sf.taverna.t2.workbench.activitytools.AbstractConfigureActivityMenuAction<ActivityClass>
        net.sf.taverna.t2.activities.apiconsumer.servicedescriptions.ApiConsumerActivityIcon
        net.sf.taverna.t2.activities.apiconsumer.servicedescriptions.ApiConsumerServiceDescription
        net.sf.taverna.t2.activities.beanshell.menu.ConfigureBeanshellMenuAction
        net.sf.taverna.t2.activities.apiconsumer.views.ApiConsumerContextualView
        net.sf.taverna.t2.activities.beanshell.menu.ConfigureBeanshellMenuAction
        net.sf.taverna.t2.activities.beanshell.servicedescriptions.BeanshellActivityIcon
        net.sf.taverna.t2.activities.beanshell.views.BeanshellContextualView
        net.sf.taverna.t2.activities.biomart.servicedescriptions.BiomartActivityIcon
        net.sf.taverna.t2.activities.biomart.views.BiomartActivityContextualView
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.datatypedescriptions.BiomobyDatatypeDescription
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.query.BiomobyActivityIcon
        net.sf.taverna.t2.activities.biomoby.query.BiomobyActivityItem
        net.sf.taverna.t2.activities.biomoby.query.BiomobyObjectActivityIcon
        net.sf.taverna.t2.activities.biomoby.query.BiomobyObjectActivityItem
        net.sf.taverna.t2.activities.biomoby.servicedescriptions.BiomobyServiceDescription
        net.sf.taverna.t2.activities.biomoby.view.BiomobyActivityContextualView
        net.sf.taverna.t2.activities.biomoby.view.BiomobyObjectActivityContextualView
        net.sf.taverna.t2.activities.biomoby.view.MobyParseDatatypeContextualView
        net.sf.taverna.t2.activities.dataflow.servicedescriptions.DataflowActivityIcon
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityContextualView
        net.sf.taverna.t2.activities.localworker.servicedescriptions.LocalworkerActivityIcon
        net.sf.taverna.t2.activities.localworker.servicedescriptions.LocalworkerServiceDescription
        net.sf.taverna.t2.activities.localworker.servicedescriptions.LocalworkerServiceProvider
        net.sf.taverna.t2.activities.localworker.views.LocalworkerActivityContextualView
        net.sf.taverna.t2.activities.rshell.servicedescriptions.RshellActivityIcon
        net.sf.taverna.t2.activities.rshell.views.RshellActivityContextualView
        net.sf.taverna.t2.activities.soaplab.servicedescriptions.SoaplabActivityIcon
        net.sf.taverna.t2.activities.soaplab.servicedescriptions.SoaplabServiceDescription
        net.sf.taverna.t2.activities.soaplab.views.SoaplabActivityContextualView
        net.sf.taverna.t2.activities.spreadsheet.servicedescriptions.SpreadsheetImportActivityIcon
        net.sf.taverna.t2.activities.spreadsheet.views.SpreadsheetImportContextualView
        net.sf.taverna.t2.activities.stringconstant.servicedescriptions.StringConstantActivityIcon
        net.sf.taverna.t2.activities.stringconstant.views.StringConstantActivityContextualView
        net.sf.taverna.t2.activities.wsdl.actions.AbstractAddXMLSplitterAction<ActivityType>
        net.sf.taverna.t2.activities.wsdl.menu.AddXMLInputSplitterMenuAction<ActivityClass>
        net.sf.taverna.t2.activities.wsdl.menu.AddXMLOutputSplitterMenuAction<ActivityClass>
        net.sf.taverna.t2.activities.wsdl.servicedescriptions.WSDLActivityIcon
        net.sf.taverna.t2.activities.wsdl.servicedescriptions.WSDLServiceDescription
        net.sf.taverna.t2.activities.wsdl.servicedescriptions.XMLInputSplitterActivityIcon
        net.sf.taverna.t2.activities.wsdl.servicedescriptions.XMLInputSplitterActivityIcon
        net.sf.taverna.t2.activities.wsdl.views.AbstractXMLSplitterActionView<BeanType>
        net.sf.taverna.t2.activities.wsdl.views.WSDLActivityContextualView
        net.sf.taverna.t2.activities.wsdl.views.XMLSplitterContextualView
        net.sf.taverna.t2.activities.wsdl.views.XMLSplitterViewFactory
        net.sf.taverna.t2.partition.AbstractActivityItem
        net.sf.taverna.t2.partition.ActivityItem
        net.sf.taverna.t2.servicedescriptions.AbstractTemplateService<ConfigType>
        net.sf.taverna.t2.servicedescriptions.ServiceDescription<ConfigType>
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.workbench.activityicons.ActivityIconManager
        net.sf.taverna.t2.workbench.activityicons.ActivityIconSPI
        net.sf.taverna.t2.workbench.activityicons.DefaultActivityIcon
        net.sf.taverna.t2.workbench.activitytools.AbstractConfigureActivityMenuAction<ActivityClass>
        net.sf.taverna.t2.workbench.design.actions.AddConditionAction
        net.sf.taverna.t2.workbench.loop.ActivityGenerator
        net.sf.taverna.t2.workbench.loop.LoopConfigurationPanel
        net.sf.taverna.t2.workbench.loop.LoopContextualView
        net.sf.taverna.t2.workbench.models.graph.GraphColorManager
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.actions.activity.ActivityConfigurationAction<A, ConfigurationBean>
        net.sf.taverna.t2.workbench.ui.actions.activity.ActivityContextualView<ConfigBean>
        net.sf.taverna.t2.workbench.ui.actions.activity.HTMLBasedActivityContextualView<ConfigBean>
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ActivityConfigurationDialog<A, B>
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ActivityConfigurationPanel<A, B>
        net.sf.taverna.t2.workbench.ui.views.contextualviews.activity.ContextualViewFactoryRegistry
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorActivitiesContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.processor.ProcessorActivitiesContextualViewFactory
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction
        net.sf.taverna.t2.workbench.views.graph.actions.SetDefaultInputPortValueAction
        net.sf.taverna.t2.workbench.views.monitor.MonitorGraphEventManager

net.sf.taverna.t2.workflowmodel.processor.activity.ActivityAndBeanWrapper

    used by
        net.sf.taverna.t2.partition.AbstractActivityItem

net.sf.taverna.t2.workflowmodel.processor.activity.ActivityConfigurationException

    used by
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityConfigView
        net.sf.taverna.t2.activities.spreadsheet.views.SpreadsheetImportConfigView
        net.sf.taverna.t2.workbench.loop.ActivityGenerator
        net.sf.taverna.t2.workbench.loop.LoopConfigurationPanel
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.workbench.ui.beanshell.views.BeanshellViewer

net.sf.taverna.t2.workflowmodel.processor.activity.ActivityInputPort

    used by
        net.sf.taverna.t2.activities.beanshell.views.BeanshellConfigView        
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.rshell.views.RshellActivityConfigView
        net.sf.taverna.t2.activities.wsdl.views.AbstractXMLSplitterActionView<BeanType>
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.ActivityInputPortSection
        net.sf.taverna.t2.ui.menu.items.activityport.ConnectInputPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.SetConstantInputPortValueMenuAction
        net.sf.taverna.t2.workbench.models.graph.DefaultGraphEventManager
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeCellRenderer
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction
        net.sf.taverna.t2.workbench.views.graph.actions.SetDefaultInputPortValueAction

net.sf.taverna.t2.workflowmodel.processor.activity.ActivityOutputPort

    used by
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.activityport.ActivityOutputPortSection
        net.sf.taverna.t2.ui.menu.items.activityport.ConnectOutputPortMenuActions
        net.sf.taverna.t2.workbench.models.graph.DefaultGraphEventManager
        
net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean

    used by
        net.sf.taverna.t2.activities.beanshell.views.BeanshellConfigView
        net.sf.taverna.t2.activities.beanshell.views.BeanshellContextualView
        net.sf.taverna.t2.activities.beanshell.views.BeanshellInputViewer
        net.sf.taverna.t2.activities.localworker.servicedescriptions.LocalworkerServiceDescription
        net.sf.taverna.t2.activities.localworker.servicedescriptions.LocalworkerServiceProvider
        net.sf.taverna.t2.activities.localworker.views.LocalworkerActivityContextualView
        net.sf.taverna.t2.activities.rshell.views.RshellActivityConfigView
        net.sf.taverna.t2.activities.rshell.views.RshellActivityContextualView
        net.sf.taverna.t2.activities.rshell.views.RshellInputViewer
        net.sf.taverna.t2.activities.rshell.views.RshellOutputViewer
        net.sf.taverna.t2.workbench.loop.ActivityGenerator

net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean

    used by
        net.sf.taverna.t2.activities.beanshell.views.BeanshellConfigView
        net.sf.taverna.t2.activities.beanshell.views.BeanshellContextualView
        net.sf.taverna.t2.activities.beanshell.views.BeanshellOutputViewer
        net.sf.taverna.t2.activities.localworker.servicedescriptions.LocalworkerServiceDescription
        net.sf.taverna.t2.activities.localworker.servicedescriptions.LocalworkerServiceProvider
        net.sf.taverna.t2.activities.localworker.views.LocalworkerActivityContextualView
        net.sf.taverna.t2.activities.rshell.views.RshellActivityConfigView
        net.sf.taverna.t2.activities.rshell.views.RshellActivityContextualView
        net.sf.taverna.t2.activities.rshell.views.RshellOutputViewer
        net.sf.taverna.t2.workbench.loop.ActivityGenerator

net.sf.taverna.t2.workflowmodel.processor.activity.impl.ActivityInputPortImpl

    used by
        net.sf.taverna.t2.workbench.ui.views.contextualviews.inputport.InputPortContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.inputport.InputPortContextualViewFactory

net.sf.taverna.t2.workflowmodel.processor.activity.impl.ActivityOutputPortImpl

    used by
        net.sf.taverna.t2.workbench.ui.views.contextualviews.outputport.OutputPortContextualView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.outputport.OutputPortContextualViewFactory
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel

net.sf.taverna.t2.workflowmodel.processor.activity.NestedDataflow

    used by
        net.sf.taverna.t2.workbench.models.graph.DefaultGraphEventManager
        net.sf.taverna.t2.workbench.models.graph.GraphController

net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBounce

    used by
        net.sf.taverna.t2.workbench.loop.AddLoopFactory

net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop

    used by
        net.sf.taverna.t2.workbench.loop.ActivityGenerator
        net.sf.taverna.t2.workbench.loop.AddLoopFactory
        net.sf.taverna.t2.workbench.loop.LoopConfigurationPanel
        net.sf.taverna.t2.workbench.loop.LoopContextualView
        net.sf.taverna.t2.workbench.loop.LoopContextualViewFactory
        net.sf.taverna.t2.workbench.loop.comparisons.Comparison

net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.LoopConfiguration

    used by
        net.sf.taverna.t2.workbench.loop.LoopConfigurationPanel
        net.sf.taverna.t2.workbench.loop.LoopContextualView

net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize

    used by
        net.sf.taverna.t2.workbench.loop.AddLoopFactory

net.sf.taverna.t2.workflowmodel.processor.iteration.impl.IterationStrategyImpl

    used by
        net.sf.taverna.t2.workbench.iterationstrategy.contextview.IterationStrategyContextualView
        net.sf.taverna.t2.workbench.iterationstrategy.editor.IterationStrategyEditor
        net.sf.taverna.t2.workbench.iterationstrategy.editor.IterationStrategyEditorControl
        net.sf.taverna.t2.workbench.iterationstrategy.editor.IterationStrategyTree

net.sf.taverna.t2.workflowmodel.processor.iteration.impl.IterationStrategyStackImpl

    used by
        net.sf.taverna.t2.workbench.iterationstrategy.contextview.IterationStrategyContextualView

net.sf.taverna.t2.workflowmodel.serialization.DeserializationException

    used by
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityConfigView
        net.sf.taverna.t2.servicedescriptions.ServiceDescriptionRegistry
        net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionDeserializer
        net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionRegistryImpl
        net.sf.taverna.t2.workbench.file.impl.T2DataflowOpener
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.run.DataflowRunsComponent
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

net.sf.taverna.t2.workflowmodel.serialization.SerializationException

    used by
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.workbench.file.impl.T2DataflowSaver
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

net.sf.taverna.t2.workflowmodel.serialization.xml.AbstractXMLDeserializer

    used by
        net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionDeserializer
        net.sf.taverna.t2.workbench.file.impl.menu.FileOpenRecentMenuAction

net.sf.taverna.t2.workflowmodel.serialization.xml.AbstractXMLSerializer

    used by
        net.sf.taverna.t2.servicedescriptions.impl.ServiceDescriptionSerializer
        net.sf.taverna.t2.workbench.file.impl.menu.FileOpenRecentMenuAction

net.sf.taverna.t2.workflowmodel.serialization.xml.ActivityXMLDeserializer

    used by
        net.sf.taverna.t2.activities.localworker.servicedescriptions.LocalworkerServiceProvider

net.sf.taverna.t2.workflowmodel.serialization.xml.DataflowXMLDeserializer

    used by
        net.sf.taverna.t2.activities.dataflow.views.DataflowActivityConfigView

net.sf.taverna.t2.workflowmodel.serialization.xml.DataflowXMLSerializer

    used by
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView

net.sf.taverna.t2.workflowmodel.serialization.xml.ProcessorXMLDeserializer

    used by
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView

net.sf.taverna.t2.workflowmodel.serialization.xml.ProcessorXMLSerializer

    used by
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView

net.sf.taverna.t2.workflowmodel.serialization.xml.XMLDeserializer

    used by
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.workbench.file.impl.T2DataflowOpener
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

net.sf.taverna.t2.workflowmodel.serialization.xml.XMLDeserializerImpl

    used by
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.workbench.file.impl.T2DataflowOpener
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

net.sf.taverna.t2.workflowmodel.serialization.xml.XMLDeserializerRegistry

    used by
        net.sf.taverna.t2.workbench.run.DataflowRunsComponent

net.sf.taverna.t2.workflowmodel.serialization.xml.XMLSerializationConstants

    used by
        net.sf.taverna.t2.ui.perspectives.myexperiment.MainComponent.T2FlowFileType
        net.sf.taverna.t2.workbench.file.impl.T2FlowFileType

net.sf.taverna.t2.workflowmodel.serialization.xml.XMLSerializer

    used by
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.workbench.file.impl.T2DataflowSaver
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent
        
net.sf.taverna.t2.workflowmodel.serialization.xml.XMLSerializerImpl

    used by
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowPersistenceHandler
        net.sf.taverna.t2.workbench.file.impl.T2DataflowSaver
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.views.results.ResultViewComponent

net.sf.taverna.t2.workflowmodel.TokenProcessingEntity

    used by
        net.sf.taverna.t2.reference.ui.InvalidDataflowReport
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeContextualView

net.sf.taverna.t2.workflowmodel.utils.AnnotationTools

    used by
        net.sf.taverna.t2.reference.ui.WorkflowLaunchPanel
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.ui.views.contextualviews.annotated.AnnotatedContextualView

net.sf.taverna.t2.workflowmodel.utils.NamedWorkflowEntityComparator

    used by
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.processor.ConditionMenuActions
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel

net.sf.taverna.t2.workflowmodel.utils.PortComparator

    used by
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.run.actions.RunWorkflowAction
        net.sf.taverna.t2.workbench.ui.workflowexplorer.WorkflowExplorerTreeModel

net.sf.taverna.t2.workflowmodel.utils.Tools -- done by method (only used methods mentioned)

    getActivityInputPort(Activity<?>, String)
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit

    getActivityOutputPort(Activity<?>, String)
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit

    getCreateAndConnectDatalinkEdit(Dataflow, EventForwardingOutputPort, EventHandlingInputPort)
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.models.graph.GraphController

    getCreateAndConnectDatalinkEdit(Dataflow, OutputPort, InputPort)
        net.sf.taverna.t2.ui.menu.items.activityport.ConnectPortsAction
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction

    getDisconnectDatalinkAndRemovePortsEdit(Datalink)
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowInputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDataflowOutputPortAction
        net.sf.taverna.t2.workbench.design.actions.RemoveDatalinkAction
        net.sf.taverna.t2.workbench.design.actions.RemoveMergeAction
        net.sf.taverna.t2.workbench.design.actions.RemoveProcessorAction

    getFirstProcessorWithActivityInputPort(Dataflow, ActivityInputPort)
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions

    getFirstProcessorWithActivityOutputPort(Dataflow, ActivityOutputPort)
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions

    getMoveDatalinkSinkEdit(Dataflow, Datalink, EventHandlingInputPort)
        net.sf.taverna.t2.workbench.models.graph.GraphController

    getProcessorInputPort(Processor, Activity<?>, InputPort)
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.models.graph.GraphController
        net.sf.taverna.t2.workbench.views.graph.actions.SetDefaultInputPortValueAction

    getProcessorOutputPort(Processor, Activity<?>, OutputPort)
        net.sf.taverna.t2.activities.biomoby.actions.BiomobyActionHelper
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.workbench.models.graph.GraphController

    getProcessorsWithActivity(Dataflow, Activity<?>)
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.dataflow.filemanager.NestedDataflowSource

    getProcessorsWithActivityInputPort(Dataflow, ActivityInputPort)
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.workbench.views.graph.actions.AddInputPortDefaultValueAction
        net.sf.taverna.t2.workbench.views.graph.actions.SetDefaultInputPortValueAction

    getProcessorsWithActivityOutputPort(Dataflow, OutputPort)
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions

    getTokenProcessingEntityWithEventForwardingOutputPort(EventForwardingOutputPort, Dataflow)
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeConfigurationView
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeContextualView

    getTokenProcessingEntityWithEventHandlingInputPort(EventHandlingInputPort, Dataflow)
        net.sf.taverna.t2.workbench.ui.views.contextualviews.merge.MergeContextualView

    possibleDownStreamProcessors(Dataflow, Processor)
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.workbench.models.graph.GraphController

    possibleUpStreamProcessors(Dataflow, Processor)
        net.sf.taverna.t2.ui.menu.items.activityport.AbstractConnectPortMenuActions
        net.sf.taverna.t2.ui.menu.items.processor.ConditionMenuActions
        net.sf.taverna.t2.workbench.models.graph.GraphController

    uniquePortName(String, Collection<? extends Port>)
        net.sf.taverna.t2.ui.menu.items.activityport.CreateAndConnectDataflowPortAction
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger

    uniqueProcessorName(String, Dataflow)
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyConsumingServiceEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddBiomobyDataTypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddMobyParseDatatypeEdit
        net.sf.taverna.t2.activities.biomoby.edits.AddUpstreamObjectEdit
        net.sf.taverna.t2.activities.biomoby.ui.BiomobyObjectTree
        net.sf.taverna.t2.workbench.file.importworkflow.DataflowMerger
        net.sf.taverna.t2.workbench.file.importworkflow.gui.ImportWorkflowWizard
        net.sf.taverna.t2.workbench.ui.workflowview.WorkflowView