myGrid

Store per-process

Details

  • Type: Improvement Improvement
  • Status: Closed Closed
  • Priority: Critical Critical
  • Resolution: Fixed
  • Affects Version/s: None
  • Fix Version/s: None
  • Component/s: Provenance, Provenance Browser
  • Labels:
    None

Description

In order to prevent huge ontologies to be held in memory store provenance per-process.

Issue Links

Depends

Activity

Ascending order - Click to sort in descending order
Hide
Permalink
Daniele Turi added a comment - 2006-08-09 16:36

Beware of problems with the enactor's transmission of ids:
http://sourceforge.net/mailarchive/message.php?msg_id=14053173

Show
Daniele Turi added a comment - 2006-08-09 16:36 Beware of problems with the enactor's transmission of ids: http://sourceforge.net/mailarchive/message.php?msg_id=14053173
Hide
Permalink
Daniele Turi added a comment - 2006-09-01 17:31

Insert warning messages if the enactor fails to associate a workflow run id to a process completion event.

Show
Daniele Turi added a comment - 2006-09-01 17:31 Insert warning messages if the enactor fails to associate a workflow run id to a process completion event.
Hide
Permalink
Daniele Turi added a comment - 2006-09-06 15:52

Without nested workflows it works but completion depends on the addition of NestedWorkflowCreatedEvent.

Show
Daniele Turi added a comment - 2006-09-06 15:52 Without nested workflows it works but completion depends on the addition of NestedWorkflowCreatedEvent.
Hide
Permalink
Daniele Turi added a comment - 2006-09-14 17:09

The per-process storage affects the browser.

Show
Daniele Turi added a comment - 2006-09-14 17:09 The per-process storage affects the browser.
Hide
Permalink
Daniele Turi added a comment - 2006-09-20 16:40

Re the first comment, when trying Paul Fisher's qtl_pathway_11.xml (with the attached input) I get a sequence of errors.
Here is the first such error (the rest are all the same, but at different times):

ERROR 2006-09-20 16:30:36,636 (uk.ac.man.cs.img.mygrid.provenance.knowledge.taverna.PerProcessProvenanceGenerator:800) - Null pointer in RDF provenance generation
java.lang.NullPointerException
at uk.ac.man.cs.img.mygrid.provenance.knowledge.taverna.PerProcessProvenanceGenerator.getID(PerProcessProvenanceGenerator.java:205)
at uk.ac.man.cs.img.mygrid.provenance.knowledge.taverna.PerProcessProvenanceGenerator.collectionConstructed(PerProcessProvenanceGenerator.java:775)
at org.embl.ebi.escience.scufl.enactor.implementation.WorkflowEventDispatcher.sendAnEvent(WorkflowEventDispatcher.java:180)
at org.embl.ebi.escience.scufl.enactor.implementation.WorkflowEventDispatcher.fireEvents(WorkflowEventDispatcher.java:125)
at org.embl.ebi.escience.scufl.enactor.implementation.WorkflowEventDispatcher$NotifyThread.run(WorkflowEventDispatcher.java:221)

Show
Daniele Turi added a comment - 2006-09-20 16:40 Re the first comment, when trying Paul Fisher's qtl_pathway_11.xml (with the attached input) I get a sequence of errors. Here is the first such error (the rest are all the same, but at different times): ERROR 2006-09-20 16:30:36,636 (uk.ac.man.cs.img.mygrid.provenance.knowledge.taverna.PerProcessProvenanceGenerator:800) - Null pointer in RDF provenance generation java.lang.NullPointerException at uk.ac.man.cs.img.mygrid.provenance.knowledge.taverna.PerProcessProvenanceGenerator.getID(PerProcessProvenanceGenerator.java:205) at uk.ac.man.cs.img.mygrid.provenance.knowledge.taverna.PerProcessProvenanceGenerator.collectionConstructed(PerProcessProvenanceGenerator.java:775) at org.embl.ebi.escience.scufl.enactor.implementation.WorkflowEventDispatcher.sendAnEvent(WorkflowEventDispatcher.java:180) at org.embl.ebi.escience.scufl.enactor.implementation.WorkflowEventDispatcher.fireEvents(WorkflowEventDispatcher.java:125) at org.embl.ebi.escience.scufl.enactor.implementation.WorkflowEventDispatcher$NotifyThread.run(WorkflowEventDispatcher.java:221)
Hide
Permalink
Daniele Turi added a comment - 2006-11-22 15:48

Closing since TAV-160 is fixed.

Show
Daniele Turi added a comment - 2006-11-22 15:48 Closing since TAV-160 is fixed.

People

Vote (0)
Watch (0)

Dates

  • Created:
    2006-08-09 16:35
    Updated:
    2006-11-22 15:48
    Resolved:
    2006-11-22 15:48
Atlassian JIRA (v4.2.2-b589#589) | Report a problem
Powered by a free Atlassian JIRA open source license for myGrid. Try JIRA - bug tracking software for your team.