Details
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Type:
Bug
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Status:
Resolved
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Priority:
Major
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Resolution: Fixed
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Affects Version/s: 1.5
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Fix Version/s: 1.5
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Component/s: None
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Labels:None
Description
Dependency error when running the FetchDragonImages workflow:
Exception in thread "Thread-66" java.lang.NoClassDefFoundError: org/jdom/output/XMLOutputter
at org.biomoby.client.taverna.plugin.BiomobyObjectTask.execute(BiomobyObjectTask.java:53)
at uk.ac.soton.itinnovation.taverna.enactor.entities.ProcessorTask.runAndGenerateTemplates(ProcessorTask.java:533)
at uk.ac.soton.itinnovation.taverna.enactor.entities.ProcessorTask.doInvocationWithRetryLogic(ProcessorTask.java:475)
at uk.ac.soton.itinnovation.taverna.enactor.entities.ProcessorTask.invokeOnce(ProcessorTask.java:393)
at uk.ac.soton.itinnovation.taverna.enactor.entities.ProcessorTask.invokeWithoutIteration(ProcessorTask.java:598)
at uk.ac.soton.itinnovation.taverna.enactor.entities.ProcessorTask.invoke(ProcessorTask.java:310)
at uk.ac.soton.itinnovation.taverna.enactor.entities.ProcessorTask.handleRun(ProcessorTask.java:242)
at uk.ac.soton.itinnovation.freefluo.core.task.NewState$1.run(NewState.java:67)
Fixed. Added dependencies for jmoby to include jdom and jmoby-others, and updated the repository on phoebus.