myGrid

<?xml version="1.0" encoding="UTF-8"?>
<s:scufl xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha" version="0.2" log="0">
  <s:workflowdescription lsid="urn:lsid:www.mygrid.org.uk:operation:generated_by_gbrowse_moby" author="Gbrowse Moby" title="" />
  <s:processor name="id" boring="true">
    <s:stringconstant>apetala3</s:stringconstant>
  </s:processor>
  <s:processor name="namespace" boring="true">
    <s:stringconstant>Global_Keyword</s:stringconstant>
  </s:processor>
  <s:processor name="getDragonBlastText__4">
    <s:description>Perform blast analysis against the Dragon database using fasta text as input.</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</s:mobyEndpoint>
      <s:serviceName>getDragonBlastText</s:serviceName>
      <s:authorityName>antirrhinum.net</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="Parse_Moby_Data_Object">
    <s:description>Processor to parse the datatype Object</s:description>
    <s:biomobyparser>
      <s:endpoint>http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</s:endpoint>
      <s:datatype>Object</s:datatype>
      <s:articleName>alleles</s:articleName>
      <s:description>Processor to parse the datatype Object</s:description>
    </s:biomobyparser>
  </s:processor>
  <s:processor name="getDragonLocusAlleles__7">
    <s:description>Retrieves collection of Antirrhinum alleles for a given Locus</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</s:mobyEndpoint>
      <s:serviceName>getDragonLocusAlleles</s:serviceName>
      <s:authorityName>antirrhinum.net</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="GenericSequence2FASTA__3">
    <s:description>Converson of MOBY Generic Sequence objects to FASTA objects</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</s:mobyEndpoint>
      <s:serviceName>GenericSequence2FASTA</s:serviceName>
      <s:authorityName>bioinfo.icapture.ubc.ca</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="parseDragonDBBlastText__5">
    <s:description>A service that takes in as input blast text from a blast against DragonDB, then parses out the subject id's of hits and returns them as a collection.</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</s:mobyEndpoint>
      <s:serviceName>parseDragonDBBlastText</s:serviceName>
      <s:authorityName>antirrhinum.net</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="getEmblDNASequence__2">
    <s:description>returns a collection of EMBL DNA Sequences related to a given AGI-Code/Keyword/EMBL Accession (e.g. &amp;quot;At2g17950&amp;quot;,&amp;quot;Superman&amp;quot;,&amp;quot;AJ012310&amp;quot;)</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</s:mobyEndpoint>
      <s:serviceName>getEmblDNASequence</s:serviceName>
      <s:authorityName>mips.gsf.de</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="getAGILocusCodes__1">
    <s:description>returns a collection of AGI_LocusCodes which are somehow related to a given Keyword in their MAtDB annotation (e.g. "wuschel")</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</s:mobyEndpoint>
      <s:serviceName>getAGILocusCodes</s:serviceName>
      <s:authorityName>mips.gsf.de</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="getDragonSequenceLocus__6">
    <s:description>Retrieves the Locus for the associated Antirrhinum(snapdragon) Sequence ID.</s:description>
    <s:biomobywsdl>
      <s:mobyEndpoint>http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</s:mobyEndpoint>
      <s:serviceName>getDragonSequenceLocus</s:serviceName>
      <s:authorityName>antirrhinum.net</s:authorityName>
    </s:biomobywsdl>
  </s:processor>
  <s:processor name="Object">
    <s:description>an identifier</s:description>
    <s:biomobyobject>
      <s:mobyEndpoint>http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl</s:mobyEndpoint>
      <s:serviceName>Object</s:serviceName>
      <s:authorityName />
    </s:biomobyobject>
  </s:processor>
  <s:link source="GenericSequence2FASTA__3:FASTA(fasta)" sink="getDragonBlastText__4:FASTA(sequence)" />
  <s:link source="Object:mobyData" sink="getAGILocusCodes__1:Object(search_keyword)" />
  <s:link source="getAGILocusCodes__1:Object(Collection - 'result_codes' As Simples)" sink="getEmblDNASequence__2:Object(search_term)" />
  <s:link source="getDragonBlastText__4:NCBI_BLAST_Text(blast)" sink="parseDragonDBBlastText__5:NCBI_BLAST_Text(blastreport)" />
  <s:link source="getDragonLocusAlleles__7:Object(Collection - 'alleles')" sink="Parse_Moby_Data_Object:mobyData('Object')" />
  <s:link source="getDragonSequenceLocus__6:Object(locus)" sink="getDragonLocusAlleles__7:Object(locus)" />
  <s:link source="getEmblDNASequence__2:CommentedDNASequence(Collection - 'output_DNASequences' As Simples)" sink="GenericSequence2FASTA__3:GenericSequence(genericsequence)" />
  <s:link source="id:value" sink="Object:id" />
  <s:link source="namespace:value" sink="Object:namespace" />
  <s:link source="parseDragonDBBlastText__5:Object(Collection - 'hit_ids' As Simples)" sink="getDragonSequenceLocus__6:Object(sequence)" />
  <s:link source="Parse_Moby_Data_Object:id" sink="output" />
  <s:sink name="output" />
</s:scufl>