Taverna 2

• Type: Bug
• Status: Closed
• Priority: Major
• Resolution: Duplicate
• Affects Version/s: 2.3.0 RC
• Fix Version/s: Post 2.4.0
• Component/s: Activity - WSDL and XML splitter
• Labels:

  None

The following error was thrown during checking of one of Paul's large workflows

ERROR 2011-07-05 18:27:59,866 (net.sf.taverna.t2.activities.wsdl.WSDLActivity:318) - Error invoking WSDL service run_eFetch
java.lang.NullPointerException
at org.apache.axis.wsdl.symbolTable.SchemaUtils.isWrappedType(SchemaUtils.java:179)
at net.sf.taverna.wsdl.parser.WSDLParser.constructArrayType(WSDLParser.java:879)
at net.sf.taverna.wsdl.parser.WSDLParser.constructType(WSDLParser.java:741)
at net.sf.taverna.wsdl.parser.WSDLParser.constructElements(WSDLParser.java:840)
at net.sf.taverna.wsdl.parser.WSDLParser.constructComplexType(WSDLParser.java:822)
at net.sf.taverna.wsdl.parser.WSDLParser.constructType(WSDLParser.java:737)
at net.sf.taverna.wsdl.parser.WSDLParser.constructElements(WSDLParser.java:840)
at net.sf.taverna.wsdl.parser.WSDLParser.constructComplexType(WSDLParser.java:822)
at net.sf.taverna.wsdl.parser.WSDLParser.constructType(WSDLParser.java:737)
at net.sf.taverna.wsdl.parser.WSDLParser.constructElements(WSDLParser.java:840)
at net.sf.taverna.wsdl.parser.WSDLParser.constructComplexType(WSDLParser.java:798)
at net.sf.taverna.wsdl.parser.WSDLParser.constructType(WSDLParser.java:731)
at net.sf.taverna.wsdl.parser.WSDLParser.constructElements(WSDLParser.java:840)
at net.sf.taverna.wsdl.parser.WSDLParser.constructComplexType(WSDLParser.java:798)
at net.sf.taverna.wsdl.parser.WSDLParser.constructType(WSDLParser.java:731)
at net.sf.taverna.wsdl.parser.WSDLParser.processParameter(WSDLParser.java:712)
at net.sf.taverna.wsdl.parser.WSDLParser.getOperationOutputParameters(WSDLParser.java:342)
at net.sf.taverna.wsdl.soap.WSDLSOAPInvoker.invoke(WSDLSOAPInvoker.java:156)
at net.sf.taverna.t2.activities.wsdl.T2WSDLSOAPInvoker.invoke(T2WSDLSOAPInvoker.java:281)
at net.sf.taverna.t2.activities.wsdl.WSDLActivity$1.run(WSDLActivity.java:289)
at java.lang.Thread.run(Thread.java:637)
WARN 2011-07-05 18:27:59,899 (net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke:234) - Failed (INVOCATION) invoking net.sf.taverna.t2.activities.wsdl.WSDLActivity@1de2247d for job DispatchJobEvent facade0:Pathway_and_Gene_to_Pubmed:Search_PubMed_2:invocation30:facade1:PathwaytoPubMed:Retrive_abstracts:invocation13300:facade1269:XPathPubmedIds:run_eFetch[]: An error occurred invoking the WSDL service
java.lang.NullPointerException
at org.apache.axis.wsdl.symbolTable.SchemaUtils.isWrappedType(SchemaUtils.java:179)
at net.sf.taverna.wsdl.parser.WSDLParser.constructArrayType(WSDLParser.java:879)
at net.sf.taverna.wsdl.parser.WSDLParser.constructType(WSDLParser.java:741)
at net.sf.taverna.wsdl.parser.WSDLParser.constructElements(WSDLParser.java:840)
at net.sf.taverna.wsdl.parser.WSDLParser.constructComplexType(WSDLParser.java:822)
at net.sf.taverna.wsdl.parser.WSDLParser.constructType(WSDLParser.java:737)
at net.sf.taverna.wsdl.parser.WSDLParser.constructElements(WSDLParser.java:840)
at net.sf.taverna.wsdl.parser.WSDLParser.constructComplexType(WSDLParser.java:822)
at net.sf.taverna.wsdl.parser.WSDLParser.constructType(WSDLParser.java:737)
at net.sf.taverna.wsdl.parser.WSDLParser.constructElements(WSDLParser.java:840)
at net.sf.taverna.wsdl.parser.WSDLParser.constructComplexType(WSDLParser.java:798)
at net.sf.taverna.wsdl.parser.WSDLParser.constructType(WSDLParser.java:731)
at net.sf.taverna.wsdl.parser.WSDLParser.constructElements(WSDLParser.java:840)
at net.sf.taverna.wsdl.parser.WSDLParser.constructComplexType(WSDLParser.java:798)
at net.sf.taverna.wsdl.parser.WSDLParser.constructType(WSDLParser.java:731)
at net.sf.taverna.wsdl.parser.WSDLParser.processParameter(WSDLParser.java:712)
at net.sf.taverna.wsdl.parser.WSDLParser.getOperationOutputParameters(WSDLParser.java:342)
at net.sf.taverna.wsdl.soap.WSDLSOAPInvoker.invoke(WSDLSOAPInvoker.java:156)
at net.sf.taverna.t2.activities.wsdl.T2WSDLSOAPInvoker.invoke(T2WSDLSOAPInvoker.java:281)
at net.sf.taverna.t2.activities.wsdl.WSDLActivity$1.run(WSDLActivity.java:289)
at java.lang.Thread.run(Thread.java:637)

• Assignee:

  Alan Williams

  Reporter:

  Alan Williams

• Created:

  2011-07-05 18:31

  Updated:

  2011-07-05 21:12

  Resolved:

  2011-07-05 21:12